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From the Department of Pathology,*
Norris Cancer Center,
University of Southern California School of Medicine, Los Angeles,
California; the Departments of Pathology
and
Medical Genetics,
Haartman Institute,
University of Helsinki, Helsinki, the Second Department of
Surgery,§
Helsinki University Central Hospital,
Helsinki, and the Jyvaskyla Central Hospital,||
Jyvaskyla, Finland
| Abstract |
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| Introduction |
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Proliferation represents a balance between cell division and death. Normal intestinal proliferation is characterized by cell division equal to cell loss. Neoplastic proliferation is grossly evident by a net increase in cells. However, the multitude of possible division and death combinations consistent with observed changes in cell number hinder description or classification. For example, the multistep accumulation of mutations in colorectal tumorigenesis is apparently matched by the histological progression from adenomas to cancers.2 Presumably, adenomas have fewer mutations and therefore fewer proliferation abnormalities compared with cancers. Adenomas may persist unchanged in size for years, and only a minority progress to cancer.3-5 Proliferation presumably becomes more "abnormal" in cancers.
A comprehensive and possible alternative description of occult human
tumor proliferation are phylogenetic trees that describe historical
relationships between individuals and populations. The clonal evolution
model of cancer implies that every tumor cell traces its origin to a
common precursor.6
In essence, a tumor represents the
physical manifestation of a large phylogenetic tree reflecting numerous
divisions, deaths, and mutations. Adjacent cells within a tumor likely
share more immediate common ancestors compared with cells from opposite
sides (Figure 1)
. Branch lengths compare
genetic differences between individuals. Greater genetic differences
imply greater numbers of intervening divisions. Mutation rates in most
tumors are too low to allow the accumulation of many
mutations.7
However, tumors lacking DNA mismatch repair
(MMR) have elevated mutation rates,8-10
most notably in
microsatellites (MSs), which allow mutations to accumulate after fewer
divisions. Therefore, polymorphic MS loci are informative on the number
of divisions since the last common ancestor.11
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| Materials and Methods |
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Adenomas and cancers removed from hereditary nonpolyposis colorectal cancer (HNPCC) patients were fixed in formalin and paraffin embedded. Clinical information was obtained from medical records. Screening intervals are the periods between colonoscopy or surgery.
MMR-deficient colorectal cell lines HCT116 and LoVo (American Type Tissue Collection, Rockville, MD) were diluted to single cells and grown in culture for 2 to 4 weeks. Approximately 5 x 106 cells were injected subcutaneously into both flanks of nude mice (BALB/c nu/nu). At various times, the mice were sacrificed and the xenografts were fixed in formalin and paraffin embedded. Data for each time point were obtained from both xenografts present in the same mouse. The initiation of single-cell clones in tissue culture defined day 0.
MS Analysis
The same approach was used for all tissues. Multiple small tissue
regions or dots of approximately 200 to 400 cells were isolated by
selective ultraviolet radiation fractionation (SURF)11
from
microscopic sections (Figure 1B)
. For human tumors, SURF dots were
estimated to contain at least 70% tumor cells. To be included for
analysis, at least 35 alleles were amplified from a dot. The DNA in
these dots were diluted to essentially single alleles with
approximately 20 to 80% of reactions yielding polymerase chain
reaction (PCR) products, which were analyzed on 6% denaturing
polyacrylamide sequencing gels and a phosphoimager (Molecular Dynamics,
Sunnyvale, CA). PCR products were labeled with [33P]dCTP
(NEN Research Products, Boston, MA) incorporated during 38 to 43 PCR
cycles. Each tissue was examined with at least two different MS loci
and with at least two independent microdissections. The
CA-dinucleotide repeat MS loci were DXS556, DXS1060, DXS418,
DXS453, MIT129, and MIT38 (Research Genetics, Huntsville, AL).
Tumor-specific MS alleles were distinguished from germline alleles originating from contaminating normal cells by two methods. A MS distribution separate from the germline allele was assumed to arise by somatic mutation in the tumor cells. In this case, the germline alleles were eliminated by truncation. When MS distributions included germline-sized alleles, some germline alleles must originate from contaminating normal cells. In these cases, up to 30% of all alleles were considered to arise from normal cells, and germline allele frequencies were reduced as far as possible by this number. The remaining alleles were considered tumor-specific MS distributions. Bimodal tumor distributions were observed in a few dots of tumors 3 and 11. The two distributions were considered as two different tumor populations, and variances were calculated for each peak. No corrections were necessary for the xenografts as the human MS primers did not amplify murine DNA.
Computer Simulations and Calculations
Simulations were performed as previously described.12 Statistical analysis was performed with Excel 7.0 (Microsoft, Bellevue, WA). Composite variances were calculated by combining the MS distributions of the individual HNPCC tumor dots or by sampling DNA isolated from entire xenograft sections.
| Results |
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The stochastic nature of mutation can mask underlying stereotypic
proliferation patterns. For example, every branch of Figure 1
may
independently accumulate different numbers of MS mutations even if
division and death histories were identical. Therefore, the general
strategy first simulates two simple but fundamentally distinct
proliferation patterns. The simulations are then compared with the MS
polymorphisms in experimental models and human tumors. Comparisons
between tissues are difficult as tumors vary in size and may be
heterogeneous with respect to morphology, age, or cell of origin. To
facilitate comparisons between physically disparate tissues, the
current approach focuses on similar sized groups of 200 to 400 cells or
dots isolated by microdissection and examined genetically by PCR
(Figure 1B)
. Another simplification is the use of X-chromosome MS loci
and tumors from male patients. Every MS allele should represent a
single cell as MMR-deficient tumors are typically near
diploid.13,14
The focus on small tissue dots requires
experimental examination of multiple dots because stochastic variation
is increased. However, as noted below, some behaviors become evident
when small populations are examined.
Somatic mutations that increase the fitness of their cells ensure prevalence due to selection. Noncoding MS mutations must be considered differently as they lack selective value and may be eliminated by chance through death. However, mutations can attain tenure regardless of selection if they occur in cells with systematic renewal. Therefore, MS mutations accumulate differently depending on their cell fates.
This analysis concentrates on two fundamentally different proliferation
patterns: stem cell or random proliferation (Figure 2)
. These two models were selected for
their functional simplicity and represent fates determined
intrinsically before or extrinsically after division. Stem cell
proliferation resembles the programmed hierarchy of normal intestinal
mucosa,12,15
and random proliferation models an unbiased or
random elimination of potentially immortal cells in cancers. Stem cell
proliferation is asymmetrical division intrinsically programmed to
reproduce one stem cell daughter and one mortal daughter. The mortal
daughter may continue to divide (three to six times in a normal
intestinal crypt),15
but her progeny all eventually die.
Random proliferation is when asymmetrical and symmetrical (both
daughters survive or die) division are equally likely. None of these
cells are formally "mortal" because fate is unknown at the time of
division and death is determined by extrinsic factors. Whereas every
lineage persists with stem cell proliferation, symmetrical loss of both
daughter cells can occur with random proliferation. Consequently, MS
mutations are sporadically lost with random proliferation but become
"fixed" within a stem cell lineage once inherited by a stem cell
daughter. With identical mutation and division rates, greater numbers
of MS mutations accumulate with stem cell proliferation.
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Cell numbers remain constant in normal mucosa, but growth must occur with neoplasia. However, kinetic studies suggest that most tumor cells die (>90%) as mitotic rates generally exceed growth rates.17,18 Therefore, as an approximation, cell division and death are considered equal between small microdissected tumor dots. Finally, tumors are characterized by defects in cell cycle regulation.1 Assuming a monoclonal origin, it is likely that adjacent cells will initially have identical MS alleles and divide approximately equally. MS frameshift mutations appear to arise secondary to slippage during replication.19,20 Therefore, division and MS mutation should be tightly linked and MS loci become polymorphic with division.
The accumulation of mutations were simulated for different numbers of
divisions, cells, or mutation rates (Figure 3
and Figure 3
in Ref. 12
). MS diversity
is summarized mathematically by the variance of each MS frequency
distribution. More polymorphic MS loci have larger variances. Each
single trial may yield a different variance, illustrating that small
populations with identical proliferation histories stochastically
accumulate different numbers of mutations. Therefore, median variance
is used to summarize the spread of the variances from multiple trials.
As previously noted for stem cell proliferation,12
median
MS variance increases linearly with division, independent of the number
of simulated cells, and with the variation expected of stochastic
mutation. In contrast, MS variance with random proliferation is limited
except with high mutation rates or larger populations. With smaller
populations or low mutation rates, random losses of mutations limit
increases in variance. Theoretically, high MS diversity in small tissue
dots is more consistent with stem cell rather than random
proliferation.
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The simulations were compared with two experimental models. The
first examines the accumulation of somatic MS mutations with age in
normal intestinal mucosa of mice with germline deficiencies (Pms2) in
MMR. These studies (with additional data points) have been previously
published12
and are summarized in Figure 4A
. The increases in median variance with
age are consistent with simulated stem cell proliferation. The
variation of the multiple intestinal dot variances mimics the simulated
variation with small numbers of stem cells (<20).
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The numbers of cells destined to further divide ("immortal") within xenograft dots are less than the total numbers of microdissected cells, and depend on the length of mortal cell survival after division. Assuming equal periods between cell division and death, the number of immortal cells is half of the microdissected cells. Therefore, with one division per day, random proliferation, and 100 to 200 immortal cells per tumor dot, xenograft MS mutation rates are estimated at less than 0.005 per division. This mutation rate is similar to the rate (0.002 to 0.0025) estimated in MMR-deficient murine intestines.12
Mitotic Cell Populations in Xenografts
Scenarios other than random proliferation may also explain the
xenograft data. For example, division may decrease in older xenografts
leading to fewer than expected mutations. This possibility seems
unlikely as the cell-cycle-associated antigen Ki-6721
was
detected in the majority (greater than 75%) of cells regardless of
xenograft age (data not shown). In addition, simulations of random
proliferation predict variance will progressively increase if larger
populations are sampled. When MS alleles were sampled from entire
xenograft sections, "composite" variance increased with xenograft
age (Figure 5A)
. Therefore, decreased
division does not appear to account for the limited median MS variances
observed in older xenograft dots.
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Stem Cell versus Random Proliferation
Small 200- to 400-cell dots accumulate different numbers of mutations with random versus stem cell proliferation. Although MS variances will be initially low after clonal expansion with both types of proliferation, differences arise with division. Based on the experimental and simulated data, median variances over 1.0 appear to distinguish between random and stem cell proliferation when mutations rates are less than 0.005. Specifically, if rates are 0.0025 mutations per division or less, median MS variance will exceed 1.0 after 400 or more stem cell divisions whereas median variance will not exceed 1.0 even after 1000 random divisions. Therefore, high median MS variances (>1.0) in small tumor dots imply either stem cell proliferation and 400 or more divisions or random proliferation with mutation rates greater than 0.0025.
Tumors from Patients with HNPCC
With this theoretical and experimental background, the MS mutations in small dots from human mutator phenotype tumors were sampled. Although serial analysis of primary isogenic human tumors is impractical, synchronous and metachronous (asynchronous) tumors in HNPCC patients provide opportunities to minimize confounding factors and observe different tumors arising within the same genetic and similar environmental backgrounds. Primary differences between these tumors should be relative ages (numbers of divisions since the last clonal expansion) and proliferation patterns.
Metachronous tumors (a cancer and three adenomas) from a HNPCC patient
demonstrated different amounts of MS diversity, as expected from
independent tumors of different ages (Table 1
and Figure 6
). The adenomas were removed during
biennial surveillance colonoscopy. Some of the highly polymorphic and
complex topographical MS distributions are illustrated in Figure 7
. The different patterns between loci
within the same tumor likely reflect independent stochastic mutation-
and locus-specific differences in mutation rates. Median variances
exceeded 1.0 for the smallest (adenoma 1, <0.5 cm) and largest
(adenoma 3, 1.0 cm) adenomas. Median variances were less than 1.0 for
adenoma 2 (0.5 cm) and the large carcinoma (number 4).
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Overall, three of five adenomas and one of six cancers exhibited median variances over 1.0. These observations suggest that many adenomas but only rare cancers accumulate evidence of stem cell proliferation. Adenomas with stem cell proliferation and low median variances are expected as they may be removed soon after clonal expansion. As noted above, median variances less than 1.0 are uninformative because they are compatible with either random proliferation or recent expansions with stem cell proliferation.
Cancer 11 was the exception to the low variances in cancers. This
moderately differentiated, sessile tumor with crypt-like structures
partially invaded the underlying muscularis and was classified as an
invasive (Dukes' B) adenocarcinoma (Figure 8)
. The apparent stem cell behavior of
this cancer was not evident by histological examination as three of the
cancers were moderately differentiated and three were poorly
differentiated. This exception highlights potential conflicts between
morphological phenotype and the dynamic phenotype22
inferred with molecular clocks. The resolution of such conflicts are
limited as morphology is dogmatic, and the current MS model is
consistent with but not definitive evidence of stem cell proliferation.
However, this patient is still alive 8 years after resection.
Persistent stem cell proliferation could account for the relatively
infrequent metastases and better prognosis of some HNPCC patients with
colorectal carcinomas.23,24
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The variance ranges of the small dots provide information on the
numbers of stem cells.12
Tumors with apparent stem cell
behavior (1, 3, 5, and 11) exhibited large variance ranges (Figure 6)
consistent with the stochastic variation expected with small
proportions (estimated at less than 20 cells) of adenoma stem cells (Figure 3A)
. Differences in ages between adenoma regions can also
account for the variation. This possibility seems unlikely as
consistently high or low variances at different MS loci were not
observed from specific tumor regions (Figure 7
and data not shown).
Note that adenoma stem cells do not have to be directly isolated and
examined because their differentiated cells will represent stem cell
genotypes if limited numbers of divisions intervene.12
Adenomas with Multiple Precursors?
A further analysis (Figure 5B)
compares median variances from
individual dots (small populations) and "composite" variances of
the MS alleles sampled from entire tumors (large populations). For
random proliferation, composite variances should equal (for recent
expansions) or exceed median variances. This expectation was generally
met for the HNPCC cancers, although some loci exhibited higher
composite variances compared with other loci. The etiologies for these
deviations are unknown and may reflect technical problems measuring MS
alleles or limitations of the simulations.
Composite and median variances should be equivalent for stem cell proliferation. The adenomas met this general expectation, although in some cases composite variances were slightly greater than median variances. Greater composite variances could arise if some of the adenoma divisions reflected random rather than stem cell proliferation. However, composite variances greatly exceeded median variances for adenomas 3 and 8 and therefore are inconsistent with stem cell proliferation. One possibility for the high composite variances is that these two adenomas were older than the other tumors. However, their screening intervals of 24 and 46 months were similar to the other tumors (6 to 60 months) and suggest they were not excessively old.
These two adenomas not only are inconsistent with stem cell proliferation but also represent a paradox for the general hypothesis that mutation rates increase with tumor progression.6,7 Regardless of proliferation type, the high composite MS variances of these adenomas imply mutation or division rates much greater than other adenomas or in the cancers.
The topographical distributions of MS mutations in these two adenomas
suggest an etiology for their apparent high mutation rates (Figure 7)
.
Instead of the relatively uniform distributions of the other tumors
(Figure 7B
and data not shown), these two adenomas (Figure 7, C and D)
had heterogeneous regional subpopulations. The MS distributions were
often different between dots. Bimodal distributions consistent with
completely distinct subpopulations were also evident in some dots.
These complex polymorphisms are not easily explained by a simple
phylogenetic tree (Figure 1)
as neighboring cells were often
genetically different. A possibility consistent with stem cell
proliferation and modest MS mutation rates is that these two adenomas
originate from more than one immediate precursor. Tumor dots from each
precursor would become polymorphic after clonal expansion. However, as
each precursor may initiate expansion with a different genotype, the
overall genetic diversity will be greater than expected for a single
precursor, leading to very high composite tumor variances.
| Discussion |
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Similarly, random proliferation is a likely consequence of the loss of programmed asymmetrical division. When every daughter cell is potentially immortal, external rather than internal factors mediate mortality. For example, cell lines exhibit exponential growth under optimal tissue culture conditions. In contrast, the same cell lines show limited growth and random proliferation as macroscopic xenografts. Although control of cell number depends on specific selective criteria, the process may effectively mimic random selection if there are few differences between clonally related tumor cells. Intermediate or varying degrees of symmetrical and asymmetrical division are possible and likely occur but would require more complex intrinsic programs or external modulation. Random or stem cell proliferation can operate indefinitely between periods of selection (clonal expansion) and therefore may be the proliferation most often recorded as MS loci become polymorphic.
The polymorphic MS loci observed in the HNPCC tumors are consistent with but cannot completely verify this model as other types of proliferation may also generate similar mutations. However, as these architectural foundations broadly organize cell behavior, they should also explain other properties of adenomas and cancers. Most adenomas do not progress to cancer,3 they express low levels of telomerase,26 and serial radiological observations demonstrate relative size stability.4,5 The failure of most adenomas to progress to cancer is puzzling as the risk is increased by the number of adenoma cells. A stem cell adenoma architecture reduces the number of cells at risk for further progression because mutations acquired in nonstem cells will be lost. Expression of oncogenic transgenes in differentiated but not stem cells can induce hyperplasia or dysplasia but not adenomas or cancers in murine intestines.27 A stem cell adenoma architecture may also explain adenoma persistence despite very low to absent telomerase expression26 because, similar to normal mucosa, only a small number of stem cells need to maintain their telomeres.
Many adenomas grow slowly or even disappear.4,5 The ability of normal mucosa to resist adenoma expansion seems limited as most intestinal cells are terminally differentiated and destined to die. However, an equilibrium between adenoma and normal mucosa could be stabilized indefinitely if their junctions were maintained by terminally differentiated adenoma and normal cells.22 Whatever advantage conferred by an adenoma genotype, further expansion would be inherently limited. Adenoma stem cell locations cannot be determined with the current analysis, and the disorganized division patterns observed in adenomas28,29 may reflect abnormalities of topography but not in an underlying stem cell hierarchy.
The inherent expansion limitations of a stem cell adenoma architecture can also account for the regional genetic heterogeneity often observed in adenomas but not in cancers.30,31 Periodic genetic heterogeneity followed by homogeneity is expected if adenomas progress through a succession of clones with greater selective advantages. However, the ability of an adenoma clone to attain dominance over another adenoma clone seems paradoxical when normal mucosa (presumably lacking selective mutations) is resistant. Alternatively, genetic heterogeneity is a natural option of a stem cell architecture as minor advantages conferred by related or unrelated32 adenoma genotypes would not readily allow clonal dominance over each other or normal cells. The polymorphic and genetically distinct tumor subpopulations but lack of apparent age heterogeneity in adenomas 3 and 8 provide evidence for coexistence rather than succession of adenoma clones.
A stem cell adenoma architecture implies that adenoma size depends primarily on the number of terminally differentiated cells. As in normal mucosa, this hierarchy allows for differentiation into a variety of cell types. Multipotent differentiation is also observed in murine adenomas,33,34 and human adenomas typically demonstrate phenotypic heterogeneity.35 Somatic mutations in genes not expressed in stem cells may alter downstream differentiation.27 Growth could result from an increase in the number of adenoma stem cells36 or the extended survival or production of differentiated adenoma cells. For example, increasing by one the number of post-stem cell divisions could double the number of adenoma cells. Conversely, regression, as seen with chemopreventive trials, may reduce the number of differentiated adenoma cells but have little influence on cancer prevention.37,38
The analysis of cancers is less informative as their less polymorphic MS loci do not usually distinguish between proliferation types. Most cancers appear to rely on extrinsic control of cell fate. Although the survival of one, none, or both cancer daughter cells may be specifically and individually determined by complex environmental and genotype interactions, the net effect appears consistent with a random selection process after most divisions. Note that random proliferation may coexist with a hierarchy of differentiation if cells selected to die further differentiate or divide into terminally differentiated cells. In this case, cell fates are not all indeterminate as, similar to stem cell proliferation, differentiation may be intrinsically programmed. However, the overall pattern is consistent with random proliferation as the initial selection of cell fate (one, none, or both daughters survive) is still by extrinsic factors.
This study represents an initial attempt to reconstruct the proliferation responsible for the complex polymorphic MS mutations in HNPCC tumors. These studies illustrate a feasible experimental approach and genetic support for the well known but occult stem cell tumor concept.17,39,40 Further refinements are limited by the laborious analysis of greater numbers of MS loci and the complexity of comprehensive simulations. The dynamic information recorded most frequently by MS mutations can be translated with a simple model of asymmetrical proliferation by small numbers of stem cells in normal mucosa and many adenomas, and random proliferation in most cancers, although alternative and more complex models cannot be eliminated. The switch from predominantly stem cell to random proliferation may be a critical and defining characteristic of malignancy.
| Acknowledgements |
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| Footnotes |
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Supported by Public Health Service Grants CA58704 and CA70858 from the National Cancer Institute.
Accepted for publication July 18, 1998.
| References |
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