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Short Communications |
From the Department of Soft Tissue Pathology,*
Armed
Forces Institute of Pathology, Washington, DC, and the
2
Department of Pathology,
Haartman
Institute of the University of Helsinki, Helsinki, Finland
| Abstract |
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| Introduction |
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Recently, the expression of the c-kit proto-oncogene has been shown in GISTs.7-10 The c-kit gene encodes for a receptor for a growth factor termed stem cell factor. The c-kit gene product (stem cell factor receptor) contains an internal tyrosine kinase component and regulates cell growth and survival.11-14 Cell types in which c-kit expression plays a functionally important role include germ cells, melanocytes, hematopoietic stem cells, mast cells, and the interstitial cells of Cajal, the gastrointestinal pacemaker cells.15-17
A specific mutation in the tyrosine kinase domain of c-kit has been found in mast cell neoplasms.18 Mutations between the transmembrane and tyrosine kinase domains in exon 11 of c-kit have been shown in GISTs7,19 and in a mast cell leukemia cell line.20 The c-kit mutations in GISTs have been shown to lead to ligand-independent activation of the tyrosine kinase of c-kit and have a tumor promoting effect in vitro.7
The c-kit mutation status of exon 11 have been studied in relatively few GISTs (five sporadic and three familial tumors) and several questions remain open. Unknown are the possible relationship of c-kit expression and the mutations, the relationship of the mutations and malignancy, and the possible specificity of the mutations for GISTs, as previously suggested.7
In this study, we further examined the c-kit expression and mutation status of exon 11 of c-kit in a series of benign and malignant GISTs and smooth muscle tumors. The results showed a consistent c-kit expression in GISTs with or without detectable mutations. The mutations occur preferentially in malignant versus benign GISTs and do not occur in leiomyomas and leiomyosarcomas. These observation suggest that the mutations in the exon 11 of c-kit might represent useful molecular genetic markers for malignant GISTs.
| Materials and Methods |
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Nineteen benign and 24 malignant or potentially malignant gastrointestinal stromal tumors (GISTs) and three esophageal leiomyomas and 11 leiomyosarcomas from different sites were obtained from the files of the Haartman Institute of the University of Helsinki, Helsinki, Finland.
Immunohistochemistry
The tumors were immunohistochemically analyzed for CD34, CD117
(the c-kit proto-oncogene protein product),
-smooth muscle actin,
desmin, and S100-protein. Immunohistochemistry was performed by using
the avidin-biotin peroxidase complex system and diaminobenizidine as
the chromogen, as previously described.9
Negative
and positive controls were included in each run. The primary
antibodies, pretreatments, and dilutions are shown in Table 1
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DNA for the PCR amplification was obtained from fresh tissue by standard phenol-chloroform-isoamylalcohol extraction and from FFPE tissues using a previously published procedure.21 The quality of DNA templates was verified by PCR amplification of a 268-bp fragment of genomic DNA as previously described.22
PCR Amplification of Exon 11 of c-kit
A PCR assay was developed to amplify exon 11 of c-kit. The forward primer CK10.4 (5'-CCA GAG TGC TCT AAT GAC TG-3') and the reverse primer CK 11.2 (5'-ACT CAG CCT GTT TCT GGG AAA CTC-3') were designed based on a previously published sequence of the human c-kit gene.23 This PCR assay (30 cycles) yielded amplification products of 192 bp. The PCR reaction conditions were the standard ones recommended by Perkin Elmer (Norwalk, CT). The annealing temperature was 56°C. The PCR products were size fractionated on 5% polyacrylamide gels and stained with ethidium bromide.
Cloning and Sequencing of PCR Products
The PCR products were purified from the gels, treated with
Klenow DNA polymerase (Boehringer Mannheim, Indianapolis, IN), blunt
end-ligated into pBSK+ phagemid (Stratagene, La
Jolla, CA), and transfected into DH5
-competent cells (Gibco-BRL,
Gaithersburg, MD). White colonies obtained from the plating on
IPTG/X-gal selective medium (Gibco-BRL) were picked and screened by PCR
as described above to confirm the presence of the appropriate inserts.
Double-stranded DNA templates were prepared from randomly selected
recombinants using Qiagen plasmid kit (Qiagen Inc., Chatsworth, CA) and
sequenced on a 373 DNA-sequencer (Applied Biosystems, Foster City, CA).
Five to nine clones were sequenced per case using the
M13 forward primer. The subsets of clones that revealed
consistent nucleotide differences from the germline were sequenced
using the reverse primers. To prevent PCR contamination, standard
precautions were undertaken.
Evaluation of Taq-polymerase Error
To exclude Taq-polymerase error as the source of clonal variation, placental DNA was amplified, cloned, and sequenced as described above.
Sequence Analysis
Computer analysis of the DNA sequences was performed using the Lasergene software (DNASTAR, Madison, WI) in connection with the data of the GenBank 107/EMBL 54 database (July 1998 edition).
| Results |
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Demographic data and clinical and histological features of all
GISTs analyzed in this study have been summarized in Tables 2 and 3
.
There were 25 gastric, 12 small intestinal, and 2 rectal primary
tumors. Five intraabdominal recurrences and 2 liver metastases were
also analyzed from a total of 43 patients. Two different lesions from
each of three patients were analyzed .
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Histological Features
Nineteen GISTs were classified as histologically benign based on low, if any, mitotic activity. All but two cases showed < 1 mitosis per 10 high power fields (HPF), one case showed 2 mitoses/10 HPF, and another 3 mitoses/10 HPF. The tumor size did not exceed 10 cm in the group of spindle cell tumors or 5 cm in the group of epithelioid tumors. Follow-up available in 13 cases did not show intra-abdominal recurrences or metastases in any of the cases.
Histologically, 15 cases showed exclusively or predominantly a spindle
cell pattern typically showing high cellularity, frequent perinuclear
vacuoles, a rich capillary vascular pattern, and a general lack of
cytoplasmic eosinophilia (Figure 1)
.
Epithelioid cytologic features with large cytoplasmic cells and
distinct cell borders were seen exclusively or predominantly in four
cases. All cases, irrespective of morphological subtype and location,
were immunohistochemically positive for CD117 (Figure 2)
. Most cases (74%) were positive for
CD34, whereas a minority of the tumors (32%) expressed
-smooth
muscle actin. All cases were negative for desmin except two epithelioid
GISTs that showed focal desmin-reactivity seen in less than 10% of the
tumor cells. All cases were negative for S100-protein.
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Analysis of the PCR amplification products of the critical region
in exon 11 of c-kit revealed a mutant band in one of 19 benign GISTs
(Case 10). Sequence analysis showed an in-frame deletion of 6 bp
involving codons 556558. The remaining 18 benign GISTs revealed only
one wild-type band each. Wil-type bands from 11 cases were cloned and
sequenced. In two benign GISTs (Case 12 and 13) sequencing showed
mutations at codon 560 (Figure 3)
.
Predicted amino acid sequences of the mutant c-kit are shown in Figure 4
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Histological Features
Twenty-one GISTs were classified as histologically malignant based on high mitotic activity (> 4 mitoses/10 HPF). The three tumors classified as potentially malignant showed a low mitotic activity but were large tumors and included a 15-cm spindle cell tumor from the stomach and two large epithelioid gastric tumors of 5.5 cm and 11 cm diameter.
Follow-up available in 15 cases of malignant or potentially malignant GISTs showed intraabdominal recurrences, metastases, or death from tumor in 13 of them.
Histologically, 19 tumors had a predominant spindle cell pattern
(Figure 5)
, and four were epithelioid.
CD117-immunoreactivity was shown in all cases (Figure 6)
, except in one (Case 26). The majority
of cases (83%) were positive for CD34 and
-smooth muscle actin was
present in 6 cases (26%), usually focally. All cases were negative for
desmin and S100-protein.
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Analysis of the PCR amplification products of exon 11 of c-kit
showed smaller mutant bands, in addition to the wild-type bands, in 12
of the 24 (50%) malignant GISTs (Figure 7)
. Sequencing of the mutant bands
revealed in-frame deletions of 6 to 21 bp (Figure 3)
. Wild-type bands
from these cases showed germline sequences of the c-kit. The remaining
12 malignant GISTs revealed only wild-type bands, and eight of them
were sequenced. Three of the eight cases showed c-kit mutations. Two
cases (Cases 37 and 38) showed point mutations, one at the codon 557
and another at the codon 576. The third case (Case 29) revealed a 3-bp
in-frame deletion involving codons 560 and 561. Predicted amino acid
sequences of the mutant c-kit are shown in Figure 4
. Among the
malignant GISTs, c-kit mutations were seen in tumors of different sites
including gastric, small intestinal, and rectal primary tumors.
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In three cases, two consecutive lesions of the same patient were analyzed. They included primary tumor and an intraabdominal recurrence in Cases 24 and 34 and two intra-abdominal recurrences in Case 40. In all cases, the banding pattern and sequences of the mutant bands remained identical in primary and recurrent lesions.
Smooth Muscle Tumors
The two esophageal leiomyomas and one small intestinal leiomyoma
were histologically spindle cell neoplasms with distinctly eosinophilic
cytoplasm, moderate cellularity, and lack of mitotic activity. All
cases were positive for
-smooth muscle actin and desmin and negative
for CD34 and CD117.
The eleven leiomyosarcomas included six from the retroperitoneum, two
from the thigh, one from the inferior vena cava and two metastatic
uterine leiomyosarcomas, one from the buttock and another from the
small intestine. Histologically these tumors showed intersecting
fascicles of spindle cells with blunt-ended nuclei and variably
eo- sinophilic cytoplasm. Significant mitotic activity was
present in each case. All cases were positive for
-smooth muscle
actin and 9 of 11 at least focally for desmin; all were negative CD117
and S100-protein. Two cases were focally positive for CD34; all other
cases were negative.
Analysis of the PCR-amplification products of exon 11 of c-kit of three leiomyomas and 11 leiomyosarcomas showed wild-type bands similar to those seen in placental DNA. Sequencing revealed 100% homology with the c-kit germline.
Evaluation of Taq-polymerase Error
No nucleotide differences were identified in ten randomly selected PCR products from the amplification of exon 11 of c-kit from placental DNA. This gives a Taq-polymerase error rate of less than 1 nucleotide difference in 1920 bp and practically ruled out Taq-polymerase error as the source of the nucleotide variation seen in the exon 11 of c-kit in GISTs.
| Discussion |
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Previous molecular studies7 have revealed mutations between the transmembrane and tyrosine kinase domains in five GISTs. Specifically, the mutations were located within codons 550 to 560 in exon 11, and no mutations were detectable in other domains of c-kit cDNA. Therefore, the exon 11 sequences coding amino acids 550582 were analyzed in the current study.
Our series of 43 benign and malignant GISTs showed that mutations in exon 11 of c-kit occur predominantly in the malignant GISTs that were tumors with high mitotic activity. Furthermore, clinically malignant tumor behavior was evident in most cases by intra-abdominal recurrences, distant metastases, or both. Mutations in the exon 11 of c-kit were observed in 62% of these tumors. In contrast, only 3 benign GISTs (16%) showed mutations, suggesting that the mutations of exon 11 of c-kit may represent a genotypic marker with a correlation to malignancy. The c-kit mutations were seen in malignant GISTs of different sites including gastric, small intestinal, and rectal tumors, indicating that in respect to the c-kit mutation status, malignant GISTs appear molecularly similar.
Lack of c-kit mutations in 12/24 malignant and potentially malignant GISTs suggests that the mutations in the exon 11 of c-kit are not the only mechanisms related to tumorigenesis and malignancy and that other molecular mechanisms explaining the differences between benign and malignant GISTs must exist. Such mechanisms may include mutations in other regions of the c-kit. Involve- ment of other genes is suggested by the greater number of the DNA copy number changes in malignant versus benign GISTs as observed in comparative genomic hybridization studies.5
Most c-kit mutations were found in the previously described hot spot region of exon 117 involving codons 550560. Clustering of the c-kit mutations in the same region supports their specific biological significance.
However, in two cases, an additional region including codons 567576 was found to be affected by both a point mutation and a deletion in two different cases. These findings suggest the possibility that mutations can involve other areas of the exon 11 of c-kit than previously described.
Analysis of the c-kit mutation pattern in consecutive lesions in 3 cases showed the persistence of the mutations that remained identical in the different recurrences. Therefore, the tumor-specific c-kit mutation pattern could be used as a potential marker of early recurrence or to trace minimal residual disease. Further studies are necessary to explore the tumor cell detection in such contexts.
The c-kit mutations were never observed in benign leiomyomas or well-documented leiomyosarcomas (actin-positive, usually desmin-positive, CD34-negative, CD117-negative). Therefore, the c-kit mutations may also represent a genotypic lineage marker for GISTs. In this respect, our findings confirm and expand on the earlier reports on the absence of c-kit mutations in smooth muscle tumors.7 Other genetic changes found in GISTs but not in smooth muscle tumors include losses in the long arm of chromosome 14, as reported based on comparative genomic hybridization studies.5,6
The presence of the mutations in exon 11 of c-kit did not correlate with c-kit expression as determined by immunohistochemistry. Whereas virtually all GISTs, including benign and malignant tumors, expressed c-kit, mutations occurred mostly in malignant cases. Therefore, explanations other than mutations in exon 11 have to be considered for the source of high c-kit expression. The interstitial cells of Cajal in the gastrointestinal nervous system show constitutional expression of c-kit and have recently been suggested as ancestor cells for GISTs.7,8,10,16,17 Therefore, c-kit expression in GISTs could merely reflect the constitutional c-kit expression that is maintained in the neoplastic state of tumor cells, which may be related to the Cajal cells or show differentiation toward them.8,10
In summary, we have evaluated a series of GISTs and typical smooth muscle tumors for the expression of c-kit protein and for the mutations in exon 11 of c-kit. The c-kit expression is consistent in both benign and malignant GISTs with and without the c-kit mutations. The c-kit mutations occur preferentially in malignant GISTs. The mutations seem to remain stable in recurrences, and could be useful tumor-specific markers. Leiomyomas and leiomyosarcomas show neither c-kit expression nor mutations, adding a new phenotypic and genotypic marker to distinguish these tumors from GISTs.
| Footnotes |
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The opinions and assertions contained herein are the expressed views of the authors and are not to be construed as official or reflecting the views of the Departments of the Army or Defense.
Accepted for publication October 4, 1998.
| References |
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