(American Journal of Pathology. 1999;155:1439-1443.)
© 1999 American Society for Investigative Pathology
MYCN Gene Amplification
Identification of Cell Populations Containing Double Minutes andHomogeneously Staining Regions in Neuroblastoma Tumors
Maisa Yoshimoto*,
Silvia Regina Caminada de Toledo*,
Eliana Maria Monteiro Caran§,
Maria Teresa de Seixas
,
Maria Lucia de Martino Lee§,
Simone de Campos Vieira Abib
,
Sonia Maria Rossi Vianna¶,
Sergio Thomaz Schettini
and
Joyce Anderson Duffles Andrade*
From the Division of Genetics of the Department of
Morphology,*
the Division of Medical Pathology of the
Department of Pathology,
and the Division of
Pediatric Surgery of the Department of
Surgery,
Universidade Federal de São
Paulo, Escola Paulista de Medicina, São Paulo; the Instituto de
Oncologia Pediátrica,§
Universidade
Federal de São Paulo, Escola Paulista de Medicina, São
Paulo; and the Division of Pediatric Oncology,¶
Hospital Servidor Público Estadual, São Paulo, Brazil
 |
Abstract
|
|---|
Neuroblastoma is the second most common solid tumor occurring in
children. Amplification of the MYCN oncogene is associated with poor
prognosis. To identify neuroblastoma tumors with MYCN
amplification, we studied the number of copies of MYCN in
interphase cells by fluorescence in situ hybridization
in 20 neuroblastoma patients. MYCN amplification appeared in 7 tumor
specimens. Interphase and metaphase studies showed a tumor cell
population with both forms of amplification, double minutes and
homogeneously staining regions, in two patients. These patients
showed a smaller tumor cell subpopulation with the presence of more
than one homogeneously staining region, suggesting that gene
amplification was undergoing karyotype evolution.
 |
Introduction
|
|---|
Neuroblastoma (NB) is a pediatric solid tumor arising from the
postganglionic sympathetic nervous system and is a leading cause of
death in infants below 1 year of age. One of its most remarkable
features is a striking clinical heterogeneity. Characterization of
genetic alterations in NB have been helpful in predicting clinical
outcome and stratifying therapy for the various
genetic changes. MYCN amplification has
proven to be an independent prognostic factor for identifying rapid
tumor progression and predicting a very poor prognosis irrespective of
age and clinical stage.1-3
The MYCN gene is a cellular
proto-oncogene of the MYC family of transcription factors. MYCN maps to
the short arm of chromosome 2 at band 2p24.4
Although its
role in oncogenesis is thought to involve extrachromosomal elements
called double minutes (DMs), it may also be integrated as reiterated
amplicons within a chromosomal site as a homogeneously staining region
(HSR). Amplicons in NBs range from 350 to 2000 kb with a consensus
commonly amplified domain defined as 130 kb.5
Although the
precise details of the amplification mechanism are poorly understood,
it is thought that a large region of genomic DNA, including the entire
MYCN gene, becomes amplified initially as extrachromosomal
DMs,6-8
possibly persisting in this form. However,
occasionally extrachromosomal DMs become linearly integrated into a
chromosome, forming one HSR by a mechanism such as unequal sister
chromatid exchange.9
Brodeur9
suggests that
MYCN amplification is an intrinsic biological property of a subset of
aggressive NBs and that tumors without amplification at diagnosis
rarely, if ever, develop this abnormality subsequently. It is generally
accepted that amplification of the MYCN oncogene is relevant to
prognosis,10,11
and most current treatment protocols
require examination of MYCN amplification in NB tumors before treatment
begins.12
Previous studies using fluorescence in
situ hybridization (FISH) analysis of MYCN have demonstrated its
utility for NB tumors.13-17
FISH directly reveals MYCN
copy number on a per-cell basis and also shows
whether amplification is present as HSR or DMs. The
observation of tumors containing both cytological forms of gene
amplification may indicate either a transition from DMs to HSRs or
independent generation of both types of structures, with subsequent
cell selection favoring the predominance of one form.
 |
Materials and Methods
|
|---|
Twenty tumor samples from patients with clinical NB diagnosis were
studied. Patient data are summarized in Table 1
. Neuroblastoma tumors were classified
according to the International Staging System (INSS).18
The histopathological evaluation was done by Shimada
classification.19
Among the 20 samples, 17 were obtained at
diagnosis and 3 after chemotherapy. Samples were obtained by biopsy or
surgery from the primary tumor in 17 cases, and in 3 cases from
metastatic bone marrow aspirates. Malignant cell percentage in the bone
marrow aspirates exceeded 50%. For FISH analysis the suspensions were
performed from tumor tissue by mechanical and enzymatic disaggregation,
and direct preparation for analysis of tumor or bone marrow cells was
done using modifications of techniques described.20,21
We
used a MYCN DNA probe, digoxigenin-labeled; detection was obtained with
fluorescein-conjugated sheep antibodies to digoxigenin (Oncor,
Gaithersburg, MD), followed by counterstaining in propidium
iodide solution containing antifade. We analyzed the cells in a Zeiss
fluorescence photomicroscope equipped with fluorescein filter. A
minimum of 100 interphase nuclei was scored per sample except for case
3, where study of only 22 nuclei was possible. Copy number was
determined by counting and averaging the number of fluorescence signals
per interphase nucleus. In cells with high
levels of gene amplification, accurate scoring was impossible, then we
included these cells, therefore, in a class of more than 50
copies.14
We only studied slides with hybridization
efficiencies higher than 90%. MYCN amplification was
considered as number of copies per nuclei exceeding 10.10
We analyzed 2000 cells from case 8 to find metaphase nuclei with both
cytological structures of gene amplification.
 |
Results and Discussion
|
|---|
We studied twenty tumors, 17 at diagnosis and 3 after therapy.
MYCN amplification was seen in 7 of 17 patients at diagnosis (41%), a
frequency surpassing that shown by the data of other
authors,22
and resulting either from the number of tumors
studied or their stage of progression. Six patients with MYCN
amplification had progressive and fatal disease, despite intensive
therapy (Table 1)
. All patients presenting MYCN amplification had stage
3 or 4 INSS classification.18
Among the 13 tumor specimens
without MYCN amplification, 5 were stage 1 or 2 (INSS) and 8 were stage
3 or 4 (INSS). Within follow-up time limits, just one patient (case 10,
stage 2) died due to infection 5 months after diagnosis. Eleven are
alive and disease-free, and one patient continues under therapy. Thus,
MYCN amplification was correlated with rapid tumor progression and a
poor outcome independent of tumor clinical stage or age of the patient
at diagnosis.
Table 2
shows cytogenetic data of the
tumors with MYCN amplification. We found the MYCN gene most frequently
amplified episomally in DMs, as seen in previous
reports.14,23
Intrachromosomal amplification as HSR is rare
in comparison to DMs in NB, and is more often observed in
vitro24,25
in cell lines rather than in primary
tumors. In three tumor samples we saw beside DMs, cells with only one
HSR (cases 1, 6, and 8); the other two (cases 1 and 8) showed both
structures in the same cells (Figure 1a)
.
NB cell lines have rarely been described as having two cell
subpopulations, one with DMs and the other with HSR.24,26
However, the same phenomenon was reported for other cell
lines.27-30
Although seldom observed in the same
cell,28,30
when present in the same cell population, they
are mutually exclusive in individual cells.26,29,31
We also
observed cells with DMs and more than one HSR (Figure 1b)
. Presence of
2 or 3 HSRs per nucleus has been seen in NB cell
lines,4,32,33
but not in direct preparations from tumors.
We believe that our observations correspond to what happens in
vivo because we did not culture our tumor samples in any way, thus
avoiding in vitro selection bias. In an in vitro
transformed mouse salivary gland epithelial cell line, DMs were
observed in 100% of cells at an early passage level.29,34
After approximately 17 in vitro passages a subpopulation of
cells devoid of DMs appeared, whereas in DM-negative cells one HSR was
present.29

View larger version (87K):
[in this window]
[in a new window]
|
Figure 1. Fluorescent in situ hybridization with probe MYCN.
a: Interphase nucleus with DMs and one HSR from case 1.
b: Interphase nucleus with DMs and five HSRs from the same
patient. c: Metaphase cell with DMs and one HSR from case 8.
d: Metaphase cell from the same case with DMs and two HSRs.
|
|
In case 8, we demonstrated in metaphase nuclei the presence of both
structures in the same cell. The results of our analysis of 2000 nuclei
from this case are shown in Table 3
and
Figures 1c and 1d
. MYCN amplification in these tumors (cases 1, 6, and
8) presented cells where both forms of amplification (DMs and HSR) are
detectable by interphase FISH analyses. We have seen cells where HSR
appears as a distinct domain of signals together with DMs as
double-specked signals throughout the same nuclei. These observations
confirm the putative mechanism of gene amplification which proposes
extrachromosomal DMs reintegrating into another chromosomal site and
amplifying by a mechanism such as unequal sister chromatid exchange,
generating a HSR.33,35
The occurrence of both
cytological structures in the same cell, as observed, indicates that a
transition may occur from DM to HSR bearers; the alternative hypothesis
that both cytological forms exist, with cell selection eventually
favoring HSR, is less likely. However, the gene amplification mechanism
is not yet well understood. High levels of gene amplification in tumors
of patients who died after intensive therapy may account for the
presence of more than one integration site, and we are tempted to
conclude that this contributed to the rapid cytogenetic evolution of
gene amplification.
 |
Acknowledgements
|
|---|
We thank Dr. Jeremy Squire for his valuable suggestions.
 |
Footnotes
|
|---|
Address reprint requests to Silvia Regina Caminada de Toledo, Disciplina de Genética, Departamento de Morfologia, Universidade Federal de São Paulo, Rua Botucatu, 740, Pavilhão Leitão da Cunha, Vila Clementino, São Paulo, Brazil. E-mail: srcp.morf{at}epm.br
Supported by Conselho Nacional de Desenvolvimento Cientifico e Tecnológico, Brazil (CNPq), Coordenação de Aperfei
amento de Pessoal de Nível Superior, Brazil (CAPES), Financiadora de Estudos e Projetos, Brazil (FINEP), and Grupo de Apoio 20 Adolescente e a Criança com Câncer, Brazil (GRAACC).
Accepted for publication July 16, 1999.
 |
References
|
|---|
-
Brodeur GM, Seeger RC, Schwab M, Varmus HE, Bishop JM: Amplification of N-myc in untreated human neuroblastoma correlates with advanced disease stage. Science 1984, 224:1121-1124[Abstract/Free Full Text]
-
Seeger RC, Brodeur GM, Sather H, Dalton A, Siegel SE, Wong KY, Hammond D: Association of multiple copies of the N-myc oncogene with rapid progression of neuroblastomas. N Engl J Med 1985, 313:11111-11116
-
Look AT, Hayes FA, Shuster JJ, Douglas EC, Catleberry RD, Bowman LC, Smith EI, Brodeur GM: Clinical relevance of tumor cell ploidy and N-myc gene amplification in childhood neuroblastoma: a Pediatric Oncology Group study. J Clin Oncol 1991, 9:581-591[Abstract]
-
Schwab M, Varmus HE, Bishop JM, Grzeschik KH, Naylor SL, Sakaguchi AY, Brodeur G, Trent J: Chromosome localization in normal human cells and neuroblastomas of a gene related to c-myc. Nature 1984, 308:288-291[Medline]
-
Hiemstra J, Schneider S, Brodeur GM: High-resolution mapping of the N-myc amplicon core domain in neuroblastomas. Prog Clin Biol Res 1994, 385:51-57[Medline]
-
Brodeur GM, Seeger RC: Gene amplification in human neuroblastomas: basic mechanisms and clinical implications. Cancer Genet Cytogenet 1986, 19:101-111[Medline]
-
Amler LC, Schwab M: Amplified N-myc in human neuroblastoma cells is often arranged as clustered tandem repeats of differentlys recombined DNA. Mol Cell Biol 1989, 9:4903-4913[Abstract/Free Full Text]
-
Schneider S, Hiemstra J, Zehnbauer B, Taillon-Miller P, Paslier D, Vogelstein B, Brodeur GM: Isolation and structural analysis of a 1.2-megabase N-myc amplicon from neuroblastoma. Mol Cell Biol 1992, 12:5563-5570[Abstract/Free Full Text]
-
Brodeur GM: Molecular basis for heterogeneity in human neuroblastomas. Eur J Cancer 1995, 31A:505-510
-
Seeger RC, Wada R, Brodeur GM, Moss TJ, Bjork RL, Sousa L, Slamon DJ: Expression of N-myc by neuroblastomas with one or multiple copies of the oncogene. Prog Clin Biol Res 1988, 271:41-49[Medline]
-
Brodeur GM: Neuroblastoma: clinical significance of genetic abnormalities. Cancer Surv 1990, 9:673-688[Medline]
-
Cohn SL, Look AT, Joshi VV, Holbrook T, Salwen H, Chagnovich D, Chester L, Rowe ST, Valentine MB, Komuro H, Castleberry RP, Bowman LC, Rao PV, Seeger RC, Brodeur GM: Lack of correlation of n-myc gene amplification with prognosis in localized neuroblastoma: A Pediatric Oncology Group study. Cancer Res 1995, 55:721-726[Abstract/Free Full Text]
-
Cohen PS, Seeger RC, Triche TJ, Israel MA: Detection of n-myc gene expression in neuroblastoma tumors by in situ hybridization. Am J Pathol 1988, 131:391-397[Abstract]
-
Shapiro DN, Valentine MB, Rowe ST, Sinclair AE, Sublett JE, Roberts WM, Look AT: Detection of n-myc gene amplification by fluorescence in situ hybridization. Am J Pathol 1993, 142:1339-1346[Abstract]
-
Leong PK, Thorner P, Yeger H, Ng K, Zhang Z, Squire J: Detection of MYCN gene amplification and deletions of chromosome 1p in neuroblastoma by in situ hybridization using routine histologic sections. Lab Invest 1993, 69:43-50[Medline]
-
Misra DN, Dickman PS, Yunis EJ: Fluorescence in situ hybridization (FISH) detection of MYCN oncogene amplification in neuroblastoma using paraffin-embedded tissues. Diagn Mol Pathol 1995, 4:128-135[Medline]
-
Squire JA, Thorner P, Marrano P, Parkinson D, Ng YK, Gerrie B, Chilton-MacNeill S, Zielenska M: Identification of MYCN copy number heterogeneity by direct FISH analysis of neuroblastoma preparations. Mol Diagnosis 1996, 1:281-289[Medline]
-
Brodeur GM, Seeger RC, Barrett A, Berthold F, Castleberry RP, DAngio G, De Bernardi B, Evans AE, Favrot M, Freeman AI, Haase G, Hartmann O, Hayes FA, Helson L, Kemshead J, Lampert F, Ninane J, Ohkawa H, Philip T, Pinkerton CR, Pritchard J, Sawada T, Siegel S, Smith EI, Tsuchida Y, Voute PA: International criteria for diagnosis, staging, and response to treatment in patients with neuroblastoma. J Clin Oncol 1988, 6:1874-1881[Abstract]
-
Shimada H, Chatten J, Newton WA, Jr, Sachs N, Hamoudi AB, Chiba T, Marsden HB, Misugi K: Histopathologic prognostic factors in neuroblastic tumors: Definition of subtypes of ganglioneuroblastoma and age-linked classification of neuroblastomas. J Natl Cancer Inst 1984, 73:405-416
-
Mandhal N: Methods in solid tumour cytogenetics. Human Cytogenetics. A Practical Approach. Volume II, Malignancy and Acquired Abnormalities, 2nd ed. Edited by Rooney DE, Czepulkowski BH. New York, IRL Press, 1992, pp 155187
-
Czepulkowski BH, Bhatt B, Rooney DE. Basic techniques for the preparation and analysis of chromosomes from bone marrow and leukaemic blood. Human Cytogenetics. A Practical Approach. Volume, II Malignancy and Acquired Abnormalities, 2nd ed. Edited by Rooney DE, Czepulkowski BH. New York, IRL Press, 1992, pp 125
-
Brodeur GM: Clinical and biological aspects of neuroblastoma. Vogelstein B Kinzler KW eds. The Genetic Basis of Human Cancer. 1998, :pp 691-711 McGraw-Hill, New York
-
Brodeur GM, Fong C: Molecular biology and genetics of human neuroblastoma. Cancer Genet Cytogenet 1989, 41:153-174[Medline]
-
Brodeur GM, Green AA, Hayes FA, Williams KJ, Williams DL, Tsiatis AA: Cytogenetic features of human neuroblastomas and cell lines. Cancer Res 1981, 41:4678-4686[Abstract/Free Full Text]
-
Windle BE, Wahl GM: Molecular dissection of mammalian gene amplification: new mechanistic insights revealed by analyses of very early events. Mutation Res 1992, 276:199-224
-
Balaban-Malenbaum G, Gilbert F: Double minute chromosomes and the homogeneously staining regions in chromosomes of a human neuroblastoma cell line. Science 1977, 198:739-741[Abstract/Free Full Text]
-
Levan A, Levan G, Mandahl N: A new chromosomes type replacing the double minutes in a mouse tumor. Cytogenet Cell Genet 1978, 20:12-23[Medline]
-
Quinn LA, Moore GE, Morgan RT, Woods LK: Cell lines from human colon carcinoma with unusual cell products, double minutes, and homogeneously staining regions. Cancer Res 1979, 39:4914-4924[Abstract/Free Full Text]
-
Cowell JK: A new chromosome region possibly derived from double minutes in an in vitro transformed epithelial cell line. Cytogenet Cell Genet 1980, 27:2-7[Medline]
-
George DL, Powers VE: Amplified DNA sequences in Y1 mouse adrenal tumor cells: association with double minutes and localization to a homogeneously staining chromosomal region. Proc Natl Acad Sci USA 1982, 79:1597-1601[Abstract/Free Full Text]
-
George DL, Francke U: Homogeneously staining chromosome regions and double minutes in a mouse adrenocortical tumor cell line. Cytogenet Cell Genet 1980, 28:217-226[Medline]
-
Balaban G, Gilbert F: Homogeneously staining regions in direct preparations from human neuroblastomas. Cancer Res 1982, 42:1838-1842[Abstract/Free Full Text]
-
Amler LC, Shibasaki Y, Savelyeva L, Schwab M: Amplification of the n-myc gene in human neuroblastomas: tandemly repeated amplicons within homogeneously staining regions on different chromosomes with the retention of single copy gene at the resident site. Mutation Res 1992, 276:291-297
-
Cowell JK: Chromosome abnormalities associated with salivary gland epithelial cell lines transformed in vitro and in vivo with evidence of a role for genetic imbalance in transformation. Cancer Res 1981, 41:1508-1517[Abstract/Free Full Text]
-
Brodeur GM, Hogarty MD: Gene amplification in human cancers: biological and clinical significance. Vogelstein B Kinzler KW eds. The Genetic Basis of Human Cancer. 1998, :pp 161-172 McGraw-Hill, New York
This article has been cited by other articles:

|
 |

|
 |
 
A. Weber, S. Starke, E. Bergmann, and H. Christiansen
The Coamplification Pattern of the MYCN Amplicon Is an Invariable Attribute of Most MYCN-Amplified Human Neuroblastomas
Clin. Cancer Res.,
December 15, 2006;
12(24):
7316 - 7321.
[Abstract]
[Full Text]
[PDF]
|
 |
|

|
 |

|
 |
 
L. A. Moreau, P. McGrady, W. B. London, H. Shimada, S. L. Cohn, J. M. Maris, L. Diller, A. T. Look, and R. E. George
Does MYCN Amplification Manifested as Homogeneously Staining Regions at Diagnosis Predict a Worse Outcome in Children with Neuroblastoma? A Children's Oncology Group Study.
Clin. Cancer Res.,
October 1, 2006;
12(19):
5693 - 5697.
[Abstract]
[Full Text]
[PDF]
|
 |
|