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From the Indiana Alzheimer Disease Center*
and
the Departments of Pathology and Laboratory
Medicine,
Medical and Molecular
Genetics,
and
Neurology,
Indiana University School of
Medicine, Indianapolis, Indiana; the Departments of
Pathology¶
and Neurology,||
University of Washington School of Medicine, Seattle, Washington; the
Department of Pathology,**
Oregon Health Sciences
University, Portland, Oregon; the Department of
Neurology,

University of
Kansas Medical Center, Kansas City, Kansas; and the Istituto Nazionale
Neurologico "Carlo Besta",

Milano, Italy
| Abstract |
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7 to 15 kd in the brain.
Purified GSS amyloid is composed primarily of
7-kd PrP
peptides, whose N terminus corresponds to residues
W81 and G88 to G90 in patients with
the A117V mutation and to residue W81 in patients with the
F198S mutation. The aim of this study was to characterize PrP in brain
extracts, microsomal preparations, and purified
fractions from A117V patients and to determine the N terminus of
PrPsc species in both GSS A117V and F198S. In all GSS A117V
patients, the
7-kd PrPsc fragment isolated from
nondigested and PK-digested samples had the major N terminus at residue
G88 and G90, respectively.
Conversely, in all patients with GSS F198S, an
8-kd
PrPsc fragment was isolated having the major N terminus
start at residue G74. It is possible that a further
degradation of this fragment generates the amyloid subunit starting at
W81. The finding that patients with GSS A117V and F198S
accumulate PrPsc fragments of different size and N-terminal
sequence, suggests that these mutations generate two distinct
PrP conformers.
| Introduction |
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-helical
structure. In contrast, PrPsc is insoluble in
nondenaturing detergents, is relatively resistant to cleavage by
proteinase K (PK), and has an increased ß-sheet
structure.4-8
The methionine (M)/valine (V) polymorphism at the prion protein gene
(PRNP) codon 129 can influence the clinical phenotype
produced by a mutation, this is seen most markedly with the D178N
mutation, which can cause Creutzfeldt-Jakob disease (CJD) or fatal
familial insomnia depending on the presence of M or V at residue
129.2
In CJD, a sporadic or inherited disease
characterized by rapid progressive dementia and spongiform degeneration
in the cerebrum and cerebellum, two main PrP patterns,
PrPsc type 1 and type 2, have been
described.9,10
PrPsc type 1 after
deglycosylation is characterized by a PK-resistant C-terminal fragment
of 21 kd, whereas PrPsc type 2 is characterized
by a C-terminal protease-resistant peptide of 19 kd.9
Gerstmann-Sträussler-Scheinker disease (GSS) is a genetically
determined autosomal dominant prion disease with a protracted clinical
course, clinically characterized by ataxia and cognitive
impairment.3
GSS is caused by mutations P102L, P105L,
A117V, G131V, F198S, D202N, Q212P, and Q217R in
PRNP.3,11,12
The pathological hallmark
of GSS is the accumulation of PrP, with and without amyloid tinctorial
properties, in the brain.3
Our studies have shown that the
pattern of PrPsc isoforms in the multiple GSS
variants analyzed is different from that seen in
CJD.11-13
Patients with CJD present full-length and
N-truncated PrP fragments whereas patients with GSS present full-length
as well as N- and C-terminal truncated PrP
peptides.10-13,14,15
Previous studies showed that the
amyloid subunit in GSS F198S is a 7-kd peptide with an N terminus at
residue G81.16
Similar studies in
patients from one American and one Alsatian family with GSS A117V
revealed that the 7-kd amyloid protein had a major N-terminal cleavage
site at residue G81 and G88
to G90.17-18
In addition, we have
reported on the presence of PrPsc isoforms of
27 to 29, 18 to 19, and 8 kd in brain extracts and microsomal
fractions of patients from the Indiana kindred with GSS
F198S.13
In GSS A117V, previous studies have been contradictory in terms of whether or not PK-resistant PrP is present.11,19,20 The aims of the present study are to determine the biochemical characteristics of PrP in several patients and an asymptomatic carrier from two unrelated American families with PRNP A117V.21,22 We analyzed brain homogenates, microsomal preparations, and purified PrP fractions. In addition, based on the observation that the pattern of digestion of PrPsc depends on the tertiary structure of the protein, we investigated whether PrP conformational isomers are present in phenotypically different GSS variants. To explore this possibility, we determined the N-terminal cleavage sites of the PrP fragments that accumulate in GSS A117V and GSS F198S.
| Materials and Methods |
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Tissue was obtained from six subjects with PRNP A117V. Seven samples from the neocortex and four samples from the cerebellum of each of six individuals were analyzed. Tissue obtained from the frontal cortex of all cases was used for subcellular fractionation, including PrPsc purification and sequencing using Edman chemistry.
Tissue was obtained from the frontal cortex and cerebellum of a patient of the Indiana kindred (GSS F198S) heterozygous for the M/V polymorphism at codon 129. In addition, tissues from the frontal cortex, caudate nucleus, and cerebellum of a homozygous V 129 patient from the same kindred were also used for PrPsc purification and amino acid sequencing.
Brain tissues from a patient with sporadic CJD and from one individual dying without neurological disease were used as control.
Brain Extracts
Tissue was homogenized in 9 volumes (10% w/v) of lysis buffer (100 mmol/L NaCl, 10 mmol/L ethylenediaminetetraacetic acid, 0.5% Nonidet P-40, 0.5% Na deoxycholate in 10 mmol/L Tris-HCl, pH 7.4). Samples were resolved in 4 to 12% acrylamide gels and transferred to nitrocellulose membranes as described.11,13 Membranes were probed with monoclonal antibody (mAb) 3F4.27 Immunoblot analysis for PrPsc was done after digestion of the homogenates with PK (10 µg/ml) for 1 hour at 37°C. Selected samples from patient 3 were also digested with 5, 10, 50, and 100 µg/ml of PK for 1 hour at 37°C.
Subcellular Fractionation
Membrane fractions were obtained as described.13,15 In brief, 10% (w/v) homogenates were prepared in 0.32 mol/L sucrose, 5 mmol/L ethylenediaminetetraacetic acid, 3 mmol/L phenylmethylsulfonyl fluoride, 20 mmol/L Tris, pH 7.5. After centrifugation at 6000 x g for 10 minutes, the pellet (P1) was discarded; the supernatant (S1) was centrifuged at 100,000 x g for 1 hour at 4°C, to obtain a cytosolic fraction (S2) and a membrane fraction (P2). To determine the presence of rough endoplasmic reticulum membranes in these preparations, blots from P2 fractions were probed with mAb 9G10 (Stressgen Biotechnology, Canada) to detect GRP94, a protein normally present in the lumen of the endoplasmic reticulum membrane fraction.28
To examine insoluble and PK-resistant PrP in the membrane fraction, the pellet (P2) was resuspended in distilled H2O, incubated on ice for 20 minutes, and centrifuged at 100,000 x g for 1 hour at 4°C. The pellet (P3) was resuspended in 150 mmol/L NaCl, 2% N-lauroylsarcosine (Sarkosyl), 25 mmol/L Tris, pH 7.4, and an aliquot removed for immunoblot analysis. The remaining sample was digested with PK at 100 µg/ml for 1 hour at 37°C. Phenylmethylsulfonyl fluoride was then added to stop PK digestion and the sample was centrifuged at 200,000 x g for 1 hour at 4°C, to obtain insoluble and PK-resistant PrP (P4). The supernatant (S4) was removed from the pellet (P4) and protein present in S4 was precipitated with methanol. The P4 and S4 fractions were resuspended in sample buffer and used for Western blot analysis.
Purification of PrPsc
PrPsc was purified as described.29 Tissue (1.5 g) was homogenized (1:4) in 0.01 mol/L Na phosphate, pH 7.4, 10% Sarkosyl, 1 mmol/L phenylmethylsulfonyl fluoride, 1 mmol/L N-ethylmaleimide, incubated 30 minutes at room temperature and spun at 22,000 x g for 30 minutes at 10°C. The supernatant (S1) was collected and centrifuged at 215,000 x g for 2.5 hours at 10°C. The pellet (P2) was resuspended in 200 µl of 50 mmol/L Tris-HCl, pH 8.5, and 1 µl of ribonuclease A (80 µg/µl) was added. After stirring for 1 hour at 37°C, 400 µl of solution B (0.6 mol/L K iodide, 6 mmol/L Na thiosulfate, 1% Sarkosyl, 10 mmol/L Na Phosphate, pH 8.5) were added. The sample was centrifuged at 215,000 x g for 1.5 hours at 10°C through a cushion of 20% (w/v) sucrose in solution B (sucrose/sample ratio; 1:4 w/v). The pellet (P3) was resuspended in 110 µl of phosphate-buffered saline. Selected samples were used for immunoblot analysis before PK digestion. Samples from all cases were digested with PK (100 µg/ml for 1 hour at 37°C).
For deglycosylation, PrPsc was digested with 5 mU PNGase F (Glyko, Novato, CA) for 2 hours as specified by the manufacturer and analyzed by immunoblot probed with mAb 3F4. In selected samples, polyclonal antibodies AS-6800 raised against synthetic peptides corresponding to residues 89 to 104 (provided by Dr. H. Diringer) and anti PrP-95 to 108 were also used.30 As negative control, filters were probed with the secondary antibody in the absence of primary antibody. An identical protocol was used for the analysis of PrPsc isolated from a case of CJD.
Protein Sequence Analysis
Purified PrP (ie, non-PK-treated and PK-digested samples) was resolved in 4 to 12% acrylamide gels, transferred to polyvinylidene difluoride Problott membrane (Applied Biosystems, Foster City, CA) and stained with Coomassie blue. The band of interest, as determined by comparison with a Western blot of the same material, was excised and analyzed on an Applied Biosystems model 473A protein sequencer using cycle programs provided by the manufacturer as previously described.31
| Results |
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Immunoblots of brain extracts from subjects carrying the
PRNP A117V mutation consistently demonstrated PrP in
non-PK-treated homogenates, however considerable heterogeneity of
PrPsc was observed. PrPsc
varied in overall amount and in the relative quantity of the different
isoforms in different brain areas of individual patients and among
patients. In many samples obtained from the frontal cortex and
cerebellum no PrPsc was detected (data not
shown). Nevertheless, PrPsc was seen in selected
samples of the frontal cortex of all patients after digestion with PK
(10 µg/ml) (Figure 1
; lanes B, D, F, H,
and J), but not in samples from the asymptomatic carrier (Figure 1
,
lane L). In cases 1 to 5 (Figure 1
; lanes B, D, F, H, and J), a
PrPsc band of
14 kd was observed, with
patients 1, 2, 3, and 5 usually showing an additional band of
7 kd
(Figure 1
; B, D, F, and J). In some blots, a 7-kd band was also seen in
patient 4. Extracts obtained from patient 3 showed 7- and 14-kd bands
in samples digested with PK at concentrations ranging from 5 to 100
µg/ml (Figure 2)
. For comparison, we
studied in-parallel samples from CJD.
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PrP partitioned with membranes in samples obtained from the
frontal cortex of subjects carrying the PRNP A117V mutation.
Examples from two clinically affected and one asymptomatic carrier are
shown in Figure 3
; lanes A, D, and G. We
observed that the membrane fraction obtained from the affected subjects
(1 to 5) contained detergent-insoluble and PK-resistant PrP (ie,
PrPsc) fragments of 7 and 14 kd.
PrPsc present in patients 3 and 4 is shown in
Figure 3
, lanes B and E. Figure 3
also shows that
PrPsc was not detected in the soluble fraction of
these patients. Soluble fractions obtained from patients 3 and 4 are
shown in Figure 3
, lanes C and F. PrPsc was not
detected in membranes or in the soluble fractions of the sample
obtained from the frontal cortex of the asymptomatic A117V mutation
carrier (Figure 3
, lanes H and I). To determine the presence of
microsomes, immunoblots were probed with mAb 9G10, directed against the
heat-shock protein GRP 94 normally present in the lumen of the
endoplasmic reticulum membranes. A positive result was obtained (not
shown).
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Because of the variability of detecting abnormal PrP in total
brain homogenates and to the fact that previously published protocols
are effective in concentrating relatively pure
PrPsc, we analyzed partially purified fractions
obtained from the frontal cortex of patients 1 to 5 and from the
asymptomatic carrier (case 6). After PK digestion, two major bands of
14 and 7 kd were detected in the patients (ie, patients 1 to 5). A
similar pattern was seen when immunoblots were probed with a panel of
antibodies raised against the mid-region of PrP (ie, PrP residues 89 to
112), however no signal was seen when the primary antibody was omitted.
An example of PrPsc banding pattern in patient 5
is shown in Figure 4
, lane B. No
PrPsc was observed in the partially purified
sample obtained from the asymptomatic carrier (not shown).
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In CJD and some other prion diseases, PrPsc
is composed of a C-terminal-glycosylated PK-resistant core. The 7-kd
PrPsc fragment seen in GSS A117V is detected with
mAb 3 F4. Considering the apparent size and immunological profile of
this peptide (ie, containing residues 109 to 112, as shown by mAb 3F4
immunoreactivity), we speculated that this peptide would not contain
the C-terminal N-linked glycosylation sites at residues 181 and 197. To
explore this possibility further, we performed enzymatic
deglycosylation on samples obtained from all patients (ie, patients 1
to 5), and showed that an identical mobility is seen in
PrPsc peptides before and after PNGase F
treatment. Figure 4
, lane C, shows a representative sample obtained
from patient 5. This finding supports the concept that glycosylation
sites are not present.
PrP Fragments in Non-PK-Treated Samples
We noticed that in selected samples the low-molecular weight PrP
fragments (ie, 7 and 14 kd) could be seen before PK digestion. To
analyze if the truncated fragments were insoluble in nondenaturing
detergent we partially purified PrP in non-PK-digested samples (through
ultracentrifugation in the presence of Sarkosyl). In all patients (ie,
patients 1 to 5), we observed bands of
27 to 35, 14, and 7 kd. A
sample from patient 5 is shown in Figure 4
, lane A. The stoichiometry
of the low-molecular weight fragments is different between PK- and
non-PK-digested samples. PK digestion increases the amount of the 7-
and 14-kd bands. The similar size of the 7-kd fragments in
non-PK-treated and PK-treated samples suggest that a similar or
identical cleavage site may be present in vivo and in
vitro.
Determination of the N-Terminal Cleavage Site of PrP Fragments in Patients with GSS A117V and GSS F198S
To characterize the primary structure of the 7-kd PrPsc fragment, partially purified and PK-treated PrP obtained from the frontal cortex of patients with GSS A117V (ie, patients 1 to 5) was analyzed using Edman chemistry, after resolution of fragments by gel electrophoresis (see Materials and Methods). Sequence analysis of the 7-kd peptide from patient 3 (for 20 cycles) yielded GQGGGTHSQWNKPS KPKTNM as the major N-terminal sequence corresponding to residues 90 to 109 of PrP. The data were consistent with minor amounts of PrP fragments starting with residues 86, 88, and 92. Analysis of the 7-kd band from the other four patients showed that the major sequence also started with residue 90 of PrP. As stated above, a 7-kd band was also seen in immunoblots obtained from non-PK-digested samples. Sequence analysis of this 7-kd band from patient 4 yielded GXGQGGGTHSQXNKP as the N-terminal sequence corresponding to residues 88 to 102 of PrP.
Patients with GSS F198S and GSS A117V accumulate
PrPsc fragments that can be cleaved by PK to
generate peptides of different mobility (ie, the small fragment is 7 kd
in GSS A117V and 8 kd in GSS F198S) in gel electrophoresis. This
observation could be because of the presence of conformational isomers
that expose different PrP residues to hydrolysis by PK in the presence
of detergents. To explore this possibility, we analyzed the 8-kd
PrPsc fragment obtained from the frontal cortex
of two patients with GSS F198S (Figure 5)
. Sequence analysis for 29 cycles
yielded GQPHGGGWGQPHGGGWGQGGGTHSQWNKP corresponding to residues 74 to
102 of PrP in both cases. This indicates PK cleavage in the second PrP
octarepeat region for GSS F198S, different from the PK cleavage site
for GSS A117V.
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| Discussion |
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It is noteworthy that PK digestion changed the stoichiometry of the
various PrP peptides observed in the undigested preparations with an
increase in the 14- and 7-kd fragments and disappearance of the
high-molecular weight isoforms of
27 to 35 kd. These findings
indicate that these patients (1 to 5) accumulate larger PrP isoforms
that can be cleaved to smaller, insoluble, PK-resistant fragments. The
detection of low-molecular weight peptides in samples that have not
been treated with PK, suggest that truncated PrP is generated in
vivo by hydrolysis of pre-existing intermediates. These peptides
may be the result of the metabolism of PrP in a pathway associated with
amyloid formation, because similarly sized fragments have been found in
isolated amyloid cores of patients with GSS.16-18
These data differ from those showing the absence of
PrPsc in patients with GSS A117V.20
It has been proposed that a transmembrane PrP isoform, detected after
limited PK digestion at low temperature in the absence of ionic
detergents, plays a central role in the pathogenesis of GSS
A117V.20
We did not investigate the presence of different
topological forms of PrP. Thus, we cannot determine whether the
PrPsc present in the patients analyzed by us (1
to 5) corresponds to the transmembrane, extracellular, secreted, or
membrane bound via a phosphatidylinositol anchor PrP species. It is
important to note that the amount of PrPsc in the
patients (1 to 5) reported here is significantly smaller than that
found in other GSS variants.11,13
In agreement with the
results presented here, recent studies in an Alsatian patient with GSS
A117V18
showed that the major component of amyloid fibrils
was a
7-kd peptide with ragged N terminus starting mainly at
G88 and G90.18
The 14- and 7-kd bands, seen in GSS A117V (1 to 5), are detected by antibodies directed to the mid-region of PrP indicating that these fragments include the intact epitope recognized by mAb 3F4 consisting of residues 109 to 112. It has been shown that in a normal human brain, PrPc is endogeneously cleaved at residues H111 or M112.15 Thus, our results suggest that patients with GSS A117V have an alternative metabolic pathway, leading to the accumulation of N- and C-truncated PrP fragments with abnormal physicochemical properties. The data also suggests that the proteolytic pathway present in these patients with GSS is different from that previously described in CJD.10,15 In the latter, N-truncated, C-terminally-intact PrPsc fragments accumulate in the brain.10,15
To determine whether the
14-kd fragment could correspond to a
glycoform of the
7-kd peptide, we performed enzymatic
deglycosylation and observed no shift in electrophoretic mobility,
suggesting that the larger fragment is either nonglycosylated or that
sugars at residues N181 and
N197 are not accessible to enzymatic cleavage.
Whether the
14-kd band is an oligomer of the 7-kd peptide or a
larger fragment with different N- and C-termini remains to be
investigated.
Studies on amyloid fractions have previously shown that patients with
GSS F198S accumulate amyloid peptides of
11 kd spanning residues 58
to 150.32
Further analysis showed that the smallest
amyloid subunit in GSS F198S and GSS Q217R corresponds to a 7-kd
fragment comprising residues W81 to
Y150 and W81 to
E146, respectively.16
In addition,
preliminary data on a patient of an American family with GSS A117V
showed a similar fibrillogenic fragment with a ragged N terminus
corresponding to W81, G82,
and Q83 and the C terminus at
E146.17
Thus, patients with these
GSS variants may accumulate amyloid subunits of similar size and
primary structure, despite the different genotypes and phenotypic
presentations.
We hypothesized that the purification of PrPsc
may allow the isolation of 1) PrP peptides that have not acquired
fibrillogenic properties, 2) peptides that are not metabolized in an
amyloidogenic pathway, or 3) peptides that are precluded from the
extraction procedure used to isolate amyloid cores. Therefore, to
expand our studies we purified PrPsc from
patients of the Indiana kindred with GSS F198S and determined the
N-terminal cleavage site of the
8-kd fragment isolated from areas
with and without amyloid accumulation. In all of the samples analyzed
the major N-terminal cleavage site corresponded to residue
G74 of the octapeptide repeat region, suggesting
that as yet unidentified local factors may contribute to PrP
amyloidogenesis. In view of the fact that the smallest amyloidogenic
fragment has a mobility of
7 kd and N terminus at
W81 and PrPsc peptides of
8 kd have an N terminus at G74, we speculate
that sequential proteolytic cleavage of a precursor
PrPsc fragment generates fibrillogenic peptides
in GSS F198S.
In conclusion, the data obtained in the GSS variants analyzed in this study demonstrate that N- and C-truncated PrP isoforms of different size and N-termini, accumulate in GSS A117V and GSS F198S. Based on the principle that the pattern of digestion (ie, protease digestion in the presence of detergents) depends on the tertiary structure of proteins,33 the data suggest that PrP conformational isomers are present in these patients.
The results show that octarepeats 3 and 4 are an integral part of the
8-kd peptide present in GSS F198S, but not in the 7-kd fragments
detected in patients with GSS A117V. The importance of the accumulation
of peptides with different N-termini in these GSS variants is unclear
at this time. However, other investigators have suggested that Cu2+
binds to a structure defined by two of the octarepeats in PrP
containing the sequence PHGGGWGQ.34
They proposed that
this binding could induce conformational changes in PrP.34
In addition, short peptides corresponding to the octapeptide repeat
motif of PrP have been reported to bind Cu2+.35,36
Moreover, it has been shown that PrP fragments can be transformed from
a predominantly
-helical monomeric form to an oligomeric
ß-sheet-rich secondary structure.37,38
Therefore,
PrPsc fragments with a distinct structure could
have different neurotoxic properties or a tendency to form aggregates,
providing a possible mechanism underlying the differences in phenotypic
presentation among GSS variants.
| Acknowledgements |
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| Footnotes |
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Supported in part by Public Health Service R01 NS 29822 and P30 AG10133; and the Italian Ministry of Health, Department of Social Services (RF 97-13 and 99-38).
Accepted for publication March 7, 2001.
| References |
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-helices into ß-sheets features in the formation of the scrapie prion proteins. Proc Natl Acad Sci USA 1993, 90:10962-10966This article has been cited by other articles:
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