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Technical Advances |







From the Department of Molecular Oncology,*
John Wayne
Cancer Institute, Santa Monica; the Division of
Hematology-Oncology,
Department of Pediatrics,
Childrens Hospital Los Angeles, University of Southern California
School of Medicine Los Angeles; and the Childrens Cancer
Group,
Arcadia, California
| Abstract |
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2-3)Galß1-4Glcß1-Cer
(GM2)/GalNAcß1-4(NeuAc
2-8NeuAc
2-3)Galß1-4Glcß1-1Cer
(GD2) synthetase
[ß-1,4-N-acetyl-galactosaminyl transferase
(GalNAc-T)] mRNA, which encodes a key glycosyltransferase for
ganglioside GD2 synthesis, was assessed as a molecular marker
for detecting metastatic neuroblastoma cells in bone marrow (BM).
GalNAc-T mRNA expression by neuroblastoma cell lines
(n = 15), primary untreated neuroblastoma
tumors (n = 29), morphologically normal BM
(n = 22), peripheral blood stem cells
(n = 10) from patients with cancers other than
neuroblastoma, and blood mononuclear cells from normal donors
(n = 17) was assessed by using reverse
transcriptase-polymerase chain reaction (RT-PCR) and
electrochemiluminescence detection assay (RT-PCR/ECL). BM harvested
from 15 neuroblastoma patients was tested before and after ex
vivo immunomagnetic bead purging, and results were
compared to immunocytological analysis of the same specimens. All
neuroblastoma cell lines (mean, 653 x 103 ECL
units) and primary tumors (mean, 683 x 103
ECL units) were positive for significant expression of GalNAc-T mRNA
compared to normal blood and BM cells. The RT-PCR/ECL assay could
detect GalNAc-T mRNA in 100 pg of total RNA, and in a mixture
of one neuroblastoma cell among 107 normal BM or blood
cells. Eight of 15 autologous BM cells harvested from patients with
neuroblastoma had tumor cells detectable by immunocytology, and
all 15 were positive for GalNAc-T mRNA. After ex vivo
purging, none of the BM cells was
immunocytology-positive, but six remained positive by the
RT-PCR/ECL assay. GalNAc-T mRNA provides a specific and sensitive
molecular marker for RT-PCR/ECL detection of infrequent neuroblastoma
cells in BM.
| Introduction |
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Development of sensitive and specific methods to detect rare tumor
cells in BM or peripheral blood is important both for risk assessment
at diagnosis and for evaluating response to therapy. In addition,
testing of autologous stem cell preparations used for AHSCT is
essential, because contaminating tumor cells could cause recurrence of
disease after infusion.3
We routinely perform
immunocytology with five anti-neuroblastoma monoclonal antibodies,
including one against ganglioside
GalNAcß1-4(NeuAc
2-8NeuAc
2-3)Galß1-4Glcß1-1Cer (GD2), that
do not react with hematopoietic cells.1
This method can
detect one neuroblastoma cell among 105
normal
mononuclear cells with very high specificity based on combined
morphological and immunostaining criteria. Quantifying tumor cells at
diagnosis, at 12 weeks after diagnosis, and at the conclusion of
initial chemotherapy, before myeloablative therapy/AHSCT, predicts
outcome in patients with stage 4 disease.4
Reverse
transcriptase-polymerase chain reaction (RT-PCR) analysis may further
improve detection of rare neuroblastoma cells and thus provide
clinically important information. There presently are no known
neuroblastoma-specific gene rearrangements that can be used for PCR or
RT-PCR analysis, and so detection of neural-associated mRNAs by RT-PCR
is being evaluated. RT-PCR assays for neural-associated gene products
including protein gene product 9.5 (PGP9.5),5,6
tyrosine
hydroxylase,6-10
and GAGE11,12
have been
reported for detecting neuroblastoma cells in BM or blood, but their
clinical utility has not been fully evaluated. A highly sensitive and
specific marker for RT-PCR analysis will be very valuable if the gene
is highly expressed and there is limited heterogeneity among tumor
cells.
Neural crest-derived tumor cells such as melanoma and neuroblastoma
express high levels of gangliosides on their
surface.13-17
GD2 ganglioside found frequently on
neuroectodermal-derived tumor cells was originally reported as an
oncofetal antigen (OFA-I-2).17
Nearly all neuroblastomas
express a high level of GD2,14,16
which is minimally or
not expressed by normal cells of nonneural origin.
ß-1,4-N-acetyl-galactosaminyl transferase (GalNAc-T;
EC2.4.1.92), which also is referred to
asGalNAcß1-4(NeuAc
2-3)Galß1-4Glcß1-Cer (GM2)/GD2
synthetase, has a key role in biosynthesis of GM2 and GD2, and its
activity is correlated with GM2 and/or GD2
expression.14,18-20
We hypothesized that GalNAc-T
mRNA would be a sensitive and specific molecular marker for
detecting small numbers of neural crest-derived tumor cells. This was
confirmed for melanoma, where RT-PCR analysis for GalNAc-T mRNA was
shown to be highly sensitive in detecting infrequent tumor cells in
blood.20
Here, we show that a combined RT-PCR and
electrochemiluminescence detection assay
[RT-PCR/electrochemiluminescence (ECL)] for GalNAc-T mRNA detects
rare neuroblastoma cells in BM. Comparison of GalNAc-T RT-PCR/ECL and
immunocytology assays indicates that GalNAc-T RT-PCR/ECL analysis is
more sensitive in detecting neuroblastoma cells than immunocytology.
| Materials and Methods |
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Fifteen neuroblastoma cell lines that were established from
patients at diagnosis or at disease progression were studied (Table 1)
.21
They included five
cell lines derived from tumors that recurred after AHSCT (CHLA-8,
CHLA-51, CHLA-79, CHLA-90, and CHLA-134) and three pairs of cell lines
obtained from the same patients at diagnosis and after disease
progression (SMS-KAN and SMS-KANR, SMS-KCN and SMS-KCNR, and CHLA-15
and CHLA-20). Most cell lines were maintained in RPMI-1640 medium
containing 2 mmol/L L-glutamine (Life Technologies, Grand
Island, NY) and 10% heat-inactivated fetal calf serum (Omega
Scientific, Tarzana, CA). Cell lines CHLA-15, CHLA-20, CHLA-79,
CHLA-90, and CHLA-134 required Iscoves modified Dulbeccos medium
(Life Technologies, Grand Island, NY). Cells were cultured in a 5%
CO2, humidified incubator at 37°C.
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Blood mononuclear cells from 17 normal adult volunteers were used as controls. Blood (10 ml) was collected in sodium citrate-containing vacutainer tubes as previously described.20 Mononuclear cells were separated by using a hypotonic density gradient solution.20 BM (n = 7) and peripheral blood stem cells (PBSC) (n = 10) were harvested from children with solid tumors other than neuroblastoma, and they did not have evident contamination by tumor cells. Additional BM (n = 15) from adult American Joint Committee on Cancer (AJCC) stage I breast cancer patients (n = 12) at the John Wayne Cancer Institute, and healthy adult donors (n = 3) (BioWittaker, Walkersville, MD) were also assessed. Mononuclear cells derived from small aliquots of these samples were cryopreserved in dimethylsulfoxide and stored in liquid nitrogen before use. Consent was obtained from donors and/or their parents for use of their cells in this research.
Bone Marrow from Patients with Neuroblastoma
Aliquots of BM harvested from 15 high-risk neuroblastoma patients were evaluated by immunocytology and by GalNAc-T RT-PCR/ECL before and after ex vivo purging using magnetic immunobeads.25 All samples were cryopreserved in liquid nitrogen vapor in Liebovitzs L15 medium (Irvine Scientific, Santa Ana, CA) containing 1.5% Hetastarch, 2.5% human serum albumin, and 10%dimethyl sulfoxide. Informed consent was obtained for use of a small aliquot of these BM cells for research purposes.
RT-PCR and Electrochemiluminescence (ECL) Assay
Total cellular RNA was extracted from tumor cell lines, tumors, blood, and BM mononuclear cells using the TRIzol reagent (Life Technologies) according to the manufacturers instructions and was treated with RNase-free DNase (Life Technologies). The quality of isolated RNA was confirmed by both the appearance of ribosomal RNA bands and RT-PCR analysis for the housekeeping gene porphobilinogen deaminase.26 The RT-PCR assay was performed as previously described.20 Briefly, RT was performed with oligo-dT primers on the amount of total RNA specified for Moloney murine leukemia virus RT (Promega, Madison, WI).20 RNA was incubated at 70°C for 5 minutes and then put on ice before addition of RT reaction reagents. RT reagents were added, and the mixture was incubated at 37°C for 2 hours and then at 95°C for 5 minutes. The PCR conditions were as follows: 1 cycle of denaturing at 95°C for 5 minutes followed by 35 cycles of 95°C for 1 minute, 65°C for 1 minute, and 72°C for 1 minute before a final primer sequence extension incubation at 72°C for 10 minutes. RT-PCR conditions were set up in a TouchDown thermocycler (Hybaid, Middlesex, UK).
Primer and Probe Synthesis
Primers and probe sequences were designed for detection of specific mRNA by using Oligo Primer Analysis Software, version 5.0 by National Biomedical Systems (Plymouth, MN). To avoid amplification of genomic DNA, primers were designed to target cDNA amplification by selecting gene-specific primer sequences on different exons. Oligonucleotide primers were synthesized and purified at Genosys (Woodland, TX). The GalNAc-T primers used were: sense 5'-CCA ACT CAA CAG GCA ACT AC-3' and antisense: 5'-GAT CAT AAC GGA GGA AGG TC-3' resulting in a RT-PCR cDNA product of 230 bp.20 The sense primer was labeled with biotin for avidin magnetic bead capturing in the ECL assay.27
Hybridization probe sequence spanning the exon-exon junction was selected to ensure detection of only RT-PCR cDNA-specific products. Probe was labeled with Tris (2,2-bipyridine) ruthenium (II) and synthesized by The Midland Certified Reagent Co. (Midland, TX). The following antisense probe sequence was synthesized: 5'-ruthenium-GTTGTACTGGGCTCCCTGGGGT-3'.
ECL Analysis of cDNA Products
Amplified PCR products (5 µl) were mixed in a final volume of 50 µl of 1x PCR buffer (Promega, Madison, WI) and 10 pmol of ruthenium-labeled GalNAc-T probe. Products were then denatured and hybridized at 65°C. Twenty-five µl of each resulting hybrid solution was added to 50 µl (0.125 mg/ml) of M280 streptavidin-coated Dynabeads (Dynal, Oslo, Norway) and vortexed for 30 minutes. After the addition of 300 µl of Origen Assay Buffer (Igen International Inc., Gaithersburg, MD), the Origen Analyzer (Igen International Inc.) was set to run the samples and record ECL signals.27 Results were expressed as ECL units (ECL U), and positive specimens were determined if the level of ECL U was greater than the cut-off point. The positive cut-off point for determining GalNAc-T mRNA-positive samples was three standard deviations more than the mean ECL U of multiple negative control samples assessed in each assay. Three standard deviations more than the mean of negative controls was considered a significant positive result. For each assay, at least two positive controls (melanoma cell lines), at least four negative controls (normal blood mononuclear cells and/or normal BM cells), and reagent controls (reagent alone without RNA or cDNA) for the RT-PCR/ECL assay were included. The assessment of patients BM, tumor specimens, and tumor cell lines were performed in the same manner as described above. Each assay contained its own set of positive and negative controls. Assays were normalized for data presentation.
Assay Sensitivity of in Vitro Tumor Cell Dilutions
Sensitivity of the RT-PCR assay was assessed by seeding SK-N-BE(2)
neuroblastoma cells (stage 4, MYCN amplified) into PBSCs or
BM cells at concentrations of one tumor cell in
104
to 106
nucleated normal
cells (see Figure 2
). Dilutions were prepared as follows: 1000, 100,
and 10 tumor cells were seeded in 10 million normal cells to get
10-4, 10-5, and
10-6 dilution, respectively. For
10-7 dilution 10 tumor cells were seeded in 100
million normal cells. The cells were pelleted, total RNA was prepared,
and then the GalNAc-T RT-PCR/ECL assay was performed.
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| Results |
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Optimal and stringent conditions were established for the primers
and RT-PCR conditions for GalNAc-T mRNA amplification. PCR conditions
were standardized and uniform throughout the studies, and equal amounts
of cDNA were used in each experiment. Under these conditions, all 15
neuroblastoma cell lines were positive for GalNAc-T mRNA at levels
ranging from 238 to 1042 x 103
ECL U (mean
of negative controls 22 x 103
± SEM
2.5 x 103
ECL U) (Table 1)
. Expression was
not related to the tumor site from which the cell line was derived,
MYCN gene status, or drug sensitivity. Interestingly, LA-N-6
and CHLA-90 cell lines that had little or no cell surface GD2 detected
by flow cytometry had substantial levels of GalNAc-T mRNA (Table 1)
.
All 29 primary neuroblastoma tumors were positive for GalNAc-T mRNA at
levels ranging from 313 to 997 x 103
ECL U
(mean of negative control 22 x 103
± SEM
3 x 103
ECL U) (Table 2)
. There was no
clear relation of GalNAc-T mRNA expression to stage or age at
diagnosis, to MYCN gene status, or to histopathology (Table 2)
. The mean ECL U of mononuclear cell samples from 17 normal donors
was 22 x 103
± SEM 1.6 x
103
ECL U. In morphologically normal BM cells and
PBSCs from children with solid tumors other than neuroblastoma
(n = 17), the mean ECL U was 18 x
103
± SEM 0.7 x 103
ECL U. For BM from breast cancer AJCC stage I patients
(n = 12), the mean ECL U was 12 x
103
± SEM 1.8 x 103
ECL U.
GalNAc-T mRNA Detection Sensitivity
To assess the sensitivity of GalNAc-T mRNA detection, RNA from two
representative neuroblastoma cells lines (CHLA-51, stage 4,
MYCN nonamplified; CHLA-8, stage 4, MYCN
amplified) was serially diluted in molecular grade water and analyzed
(Figure 1)
. GalNAc-T mRNA could be
detected consistently in as low as 100 pg of total RNA (Figure 1)
.
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Assessment of Bone Marrow before and after ex Vivo Immunomagnetic Bead Purging
The specificity and sensitivity of the GalNAc-T RT-PCR/ECL assay
was further evaluated by analyzing BMs harvested from 15 children with
neuroblastoma for AHSCT (Table 3)
. These
BM cells were purged ex vivo with immunomagnetic beads using
a monoclonal antibody mixture that included one directed against GD2.
Aliquots of BM from before and after purging were analyzed by
immunocytology and RT-PCR/ECL. Samples were blinded so that
immunocytology and purging information was not known by individuals
performing the RT-PCR/ECL assay. Before purging, 8 of the 15 BMs had
detectable neuroblastoma cells by immunocytology at a frequency of 1 to
70 per 105
nucleated BM cells; whereas, after
purging, none were positive. By RT-PCR/ECL, all samples were positive
before purging with GalNAc-T mRNA ranging from 162 to 411 x
103
ECL U. After purging, GalNAc-T mRNA detection
ranged from 16 to 275 x 103
ECL U, with 6
of 15 BM cell remaining positive. The analyses were run three times,
and results were consistent with minimal deviation. Within the limits
of this small study, there was no significant correlation between the
number of tumor cells detected by immunocytology and the level of
GalNAc-T mRNA in BM before purging. This study indicates that the
GalNAc-T RT-PCR/ECL assay is more sensitive than immunocytology in
identifying neuroblastoma cells in BM. In all cases, BM after purging
showed significant reduction of RT-PCR/ECL values, furthermore, in nine
cases the RT-PCR/ECL values were reduced to below background level for
the BM after purging. The clinical follow-up of these AJCC stage IV
patients showed that all six of the patients with GalNAc-T
mRNA-positive BM after purging had developed disease progression within
3 years. Three patients whose BM were GalNAc-T-negative after purging
did not have disease progression.
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| Discussion |
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The sensitivity and specificity of detecting neuroblastoma cells with the GalNAc-T RT-PCR/ECL assay are excellent. In the in vitro model experiments, the assay can detect GalNAc-T mRNA in as low as 100 pg of total RNA, and can detect one tumor cell per 107 normal nucleated cells. All eight BMs from patients that contained neuroblastoma cells detectable by immunocytology (1 to 70 tumor cells per 105 nucleated cells) also had significant levels of GalNAc-T mRNA. In addition, a GalNAc-T mRNA signal was detected in seven BMs that did not have detectable tumor cells by immunocytology. Ex vivo immunomagnetic bead purging of these 15 BMs, which is directed at removing neuroblastoma cells while preserving essential BM stem cells, decreased GalNAc-T mRNA from easily detectable to control levels in 9 of 15 BMs, providing further evidence of specificity. Thus, the data indicate that RT-PCR assessment of GalNAc-T mRNA is a sensitive and specific semiquantitative method for detecting small numbers of neuroblastoma cells in BM or blood.
Expression of other neural tissue-associated genes has been evaluated for detecting neuroblastoma cells in marrow or blood using RT-PCR by other groups. These include PGP9.5,5,6 tyrosine hydroxylase,6-9 MAGE,11 and GAGE11,12 genes. We have evaluated expression of these genes in neuroblastoma cell lines and primary tumors with quantitative and qualitative RT-PCR and with Northern analysis and found that PGP9.5 and tyrosine hydroxylase are expressed by virtually all neuroblastomas, whereas MAGE and GAGE genes are less frequently expressed.29,30 Expression of PGP9.5 is consistent and at a higher level than tyrosine hydroxylase.29,30
Detection of rare neuroblastoma cells in BM or blood is likely to be important for assessing risk at diagnosis and for evaluating response to therapy. The latter, if highly correlated with outcome, could provide surrogate information for therapeutic decisions. Immunocytological evaluation of BM from patients with stage 3 and 4 disease provides prognostic information at diagnosis as well as during therapy in that patients with the highest number of tumor cells have the worst outcome.1,4 Although immunocytology can identify one tumor cell among 105 normal mononuclear cells, many patients with stage 4 disease who do not have tumor cells detectable by this test during therapy still have a poor outcome. RT-PCR detection of GalNAc-T mRNA is more sensitive than standard immunocytology, but the clinical value of detecting neuroblastoma cells at a level of a few cells in BM or blood remains to be determined. Thus, performance of both RT-PCR/ECL and immunocytology analyses will determine whether some of those patients whose BM are negative by immunocytology are positive by RT-PCR. Clinical follow-up will then determine whether outcome is different for patients with RT-PCR detectable versus nondetectable tumor cells.
RT-PCR analysis using GalNAc-T mRNA should further improve assessment of autologous stem cells used for hematopoietic reconstitution after myeloablative therapy. The clinical significance of one neuroblastoma cell among 105 to 107 BMs or PBSCs used for AHSCT is not yet known; however, one per 105 could result in infusing 2 to 4 x 104 tumor cells into a 10-kg or 20-kg patient. Although the clonogenicity of neuroblastoma cells in BM or blood is likely to be different for each tumor, the risk of relapse from infused malignant cells could be significant. Neuroblastomas that recurred after autologous BM transplantation with nonpurged BM cells that had been genetically marked with the neo gene demonstrated that infused neuroblastoma cells can establish tumors in vivo.3 Thus, removal of detectable neuroblastoma cells by ex vivo purging may be a critical factor for achieving relapse-free survival after AHSCT. In the current study, all BM cells before purging were GalNAc-T mRNA-positive, including those that were immunocytology-positive. After purging, 9 of the 15 GalNAc-T mRNA-positive BM cells were negative for the signal. A persistent signal after purging could be due to incomplete purging, because the signal for nine samples was decreased to control levels after purging, including five of eight with immunocytologically detected tumor cells in the before purging BM cells. In addition, the level of GalNAc-T mRNA remaining in the six BM cells after purging was decreased by 33 to 80% compared to before purging, suggesting a decrease in tumor cells. Follow up on these and additional patients will determine the prognostic significance of detecting GalNAc-T mRNA in stem cell preparations used for hematopoietic reconstitution.
Anti-GD2 monoclonal antibodies alone or with cytokines have been used to treat neuroblastoma and melanoma patients.31-33 Recent phase I and II studies of neuroblastoma have suggested an anti-tumor effect, and a phase III randomized study testing the mouse/human chimeric anti-GD2 antibody ch14.18 with GM-CSF and interleukin-2 with or without 13-cis-retinoic acid after myeloablative therapy and AHSCT will be performed by the Childrens Oncology Group. In addition, a phase I study of a humanized anti-GD2 antibody/interleukin-2 fusion protein is underway. Identification of infrequent neuroblastoma cells in BM or blood using the GalNAc-T RT-PCR assay in these studies could contribute to evaluation of these GD2-directed treatments.
The study demonstrates that a neural tumor-associated enzyme necessary for ganglioside biosynthesis can be used as a diagnostic and follow-up RT-PCR marker. We and others have demonstrated that biochemical detection of gangliosides does not always correlate with monoclonal antibody detection level, and that the monoclonal antibody binding to cell surface gangliosides may underestimate the individual ganglioside expression.34-36 The sensitivity of antibody detection of cell surface antigen depends highly on epitope exposure and accessibility to antibody. In the current study, we demonstrate that neuroblastoma cell lines (LA-N-6, CHLA-90) with no or little detectable cell surface ganglioside GD2 by flow cytometry, do express GalNAc-T mRNA. Thus, GalNAc-T mRNA provides a sensitive means of identifying neuroblastoma cells independently from expression of cell surface GD2 as detected by monoclonal antibody.
In summary, GalNAc-T mRNA meets criteria for being a useful marker for detecting rare neuroblastoma cells. It is uniformly and highly expressed by primary and metastatic tumor cells, by tumor cells with or without MYCN amplification, and by tumor cells resistant or sensitive to chemotherapeutic agents. By contrast, it is expressed at 10- to 100-fold lower levels by normal blood, including hematopoietic stem cells, and BM cells. This marker, in combination with others such as PGP9.5 and tyrosine hydroxylase, should provide a useful panel for evaluating blood and BM cells for the presence of infrequent neuroblastoma cells in patients with high-risk disease. The clinical significance of detecting such cells will need to be assessed in uniformly treated patients.
| Footnotes |
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Supported in part by grants CA 12582 and CA 02649 from the National Cancer Institute, the Department of Health and Human Services, and by the Neil Bogart Memorial Fund of the T. J. Martell Foundation for Leukemia, Cancer, and AIDS Research.
The study was a collaborative research program between the Department of Molecular Oncology, JWCI, and IGEN International Inc.
Accepted for publication April 23, 2001.
| References |
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