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From the Department of Molecular and Experimental
Medicine,*
The Scripps Research Institute, and the
Department of Pathology,
The Scripps Clinic,
La Jolla, California; and the Department of Clinical
Biochemistry
and RNA Regulation
Center,
Institute of Molecular
Biology, University of Copenhagen, Copenhagen, Denmark
| Abstract |
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| Introduction |
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Using serum antibody from a patient with HCC to screen a cDNA
expression library we recently identified a 62-kd RNA-binding protein
that elicited a humoral immune response in
20% of HCC
patients.2
p62 contains one set of the RNA recognition
motif3
and four hnRNP K
homology (KH) domains4-6
and belongs to the family of IMPs (insulin-like growth factor II
mRNA-binding proteins).7
The human IMPs have high sequence
identity with and similar RNA-binding domain distribution as other
RNA-binding proteins such as the Xenopus Vg1RBP/Vera
protein,8,9
the chicken zipcode-binding
protein-1,10
and the mouse c-myc-coding region
instability determinant-binding protein.11
p62 represents
a splice variant of IMP-2 and lacks 43 amino acids between the KH 2 and
KH 3 domains, but the functional significance of the alternative
splicing is currently unknown. These RNA-binding proteins have been
implicated in posttranscriptional events such as RNA localization,
stability, and translatability. Intracellular localization of
Xenopus Vg1 and chicken ß-actin mRNAs takes place via
cis-elements in their 3'UTR that associate with Vg1RBP/Vera
and zipcode-binding protein-1, respectively. The instability of mouse
c-myc mRNA is partly mediated through endonucleolysis of an
element in the coding region that is shielded from degradation by
coding region instability determinant-binding protein. Finally, the
human Koc (K homology protein overexpressed in cancer) protein, that is
identical to IMP-3, was originally isolated by screening for genes
differentially expressed in pancreatic cancer.12
In this study we have examined the role of p62 in hepatic tumorigenesis. We show that p62 is expressed at high levels in fetal liver but is not detectable in adult liver. However, p62 is aberrantly and uniformly expressed in malignant cells of HCC nodules and in some cells in cirrhotic nodules. The results indicate that p62 has features associated with oncofetal proteins and its role in tumorigenesis could be by way of regulation of mRNA stability.
| Materials and Methods |
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Liver tissue from 27 HCC patients were obtained from Henan Medical
University, Henan Province, Peoples Republic of China and from the
Department of Pathology, the Scripps Clinic, La Jolla, CA. Biopsies or
surgically removed specimens were fixed in 10% formalin and embedded
in paraffin for routine histological examination. The clinical data (20
males and 7 females; mean age, 49.3 years; range, 27 to 82 years) and
pathological diagnoses are summarized in Table 1
. HCC grading criteria were according to
those described.13
Additional paraffin blocks from the
Department of Pathology, Scripps Clinic, La Jolla, consisted of nine
liver specimens from normal donors, two from patients with poorly
differentiated CCC (see Table 1
for clinical data), and 23 from
patients with liver cirrhosis. Patients with liver cirrhosis included
18 males and 5 females ranging from 30 to 66 years (mean age, 53.9
years). Five fetal livers ranging from 50 to 125 days were obtained
from the Central Laboratory for Human Embryology (University of
Washington, Seattle, WA), which is a National Institutes of Health
funded center for collecting fetal embryos for research purposes.
Hematoxylin and eosin (H&E)-stained sections of all specimens including
cancer and noncancer cases were examined by two senior pathologists
followed by separately conducted immunohistochemical analysis by other
authors in this report.
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Paraffin-embedded liver tissue specimens were sectioned at 5 µm and picked up on Superfrost plus slides (Fisher Scientific, Pittsburgh, PA). Antigen retrieval was performed by microwave-heating methods in a citrate-based antigen retrieval solution (BioGenex, San Ramon, CA) according to the manufacturers recommendation. Briefly, the sectioned slides were deparaffinized using xylene (Fisher Scientific), hydrated by dipping 20 times in each concentration of ethyl alcohol (100, 95, and 75%), and rinsed in distilled water several times. The slides were put into boiling citrate-based antigen retrieval solution and heated in a microwave oven for 15 minutes with 5- to 10-second sudden boiling at 20- to 30-second intervals. The heated slides were cooled down to room temperature in a water bath, rinsed with distilled water, and washed three times with phosphate-buffered saline (PBS) (10 mmol/L KH2PO4, 2 mmol/L NaH2PO4, 140 mmol/L NaCl, 40 mmol/L KCl, pH7.4). The sections were reacted with anti-p62C antibodies (diluted at 1:100 in PBS) and stained with fluorescein isothiocyanate-conjugated secondary antibody (Caltag, Burlingame, CA). Immunofluorescence was observed in an Olympus epifluorescence microscope BHT (Olympus Optical Co., Tokyo, Japan) using a x20 or x50 water immersion lens. Confocal microscopy was performed with a Zeiss LSM510 confocal laser-scanning microscope.
Protein Expression, Antibodies, and Western Blot Analysis
IMP-1 and Koc/IMP-3 cDNAs were inserted into pET28 vectors as described.2 p62 and golgin-97 expression vectors, the latter encodes a Golgi autoantigen used as an unrelated control,14 were constructed as previously described.2 The expression vectors were transformed into Escherichia coli BL21 (DE3) cells and recombinant proteins were expressed by induction with IPTG for 4 hours. The recombinant proteins were affinity-purified on a Ni-NTA column and eluted with a 7 mol/L-urea-containing solution according to the manufacturers instructions (Qiagen, Santa Clarita, CA). Rabbit anti-p62C was made against a peptide containing the C-terminal 10 amino acids of p62 (PQGVASQRSK), which shares no amino acid homology with IMP-1 and Koc/IMP-3, and anti-golgin-97 was made against full-length golgin-97. Female New Zealand White rabbits were immunized with 100 to 250 µg of synthesized peptide or purified recombinant protein in Freunds complete adjuvant, and boosted 1 month later with the same amount of peptide or protein in Freunds incomplete adjuvant. Antisera were collected 10 days after the booster injection. One hundred ng of recombinant protein was run on each lane of 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to nitrocellulose membranes. The membranes were blocked with 5% skim milk for 30 minutes, incubated with diluted rabbit anti-p62C (1:1500) for 1 hour, followed by horseradish peroxidase-conjugated secondary antibody (Caltag, Burlingame, CA). Reactivities were detected by the chemiluminescence method using enhanced chemiluminescence reagents (Amersham Life Science, Buckinghamshire, UK).
Antibody Absorption
Five hundred µg of recombinant proteins (p62 or golgin-97) were run on 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels and transferred to nitrocellulose membranes. The membranes containing only the recombinant protein were cut into small slices. The slices were blocked in 5% milk overnight, and divided into three parts. Five hundred µl of diluted anti-p62C antibody was incubated with the first part of these membrane slices for 8 hours, the absorbed supernatant recovered, and repeated absorption performed with the other two membrane sections in an identical manner. The absorbed antibody was kept in a -20°C freezer until use for immunofluorescent staining.
RNA from Liver Tissues
The method for RNA extraction was a modification of a method previously described.15 Twenty sections of 5-µm thick paraffin-embedded liver specimens were used and areas were selected that contained at least 80% tumor hepatocytes as determined by examining adjacent H&E-stained sections. To avoid contamination, a separate razor blade was used to dissect out the tumor nodules of each liver specimen. The sections were transferred to 1.5-ml Eppendorf tubes, deparaffinated in three changes of 1.0 ml xylene (Fisher Scientific) and three washes of 1.0 ml ethanol. After brief drying, tissues were incubated with 300 ml of lysis buffer (10 mmol/L Tris-HCl, pH 8.0, 20 mmol/L ethylenediaminetetraacetic acid, 2% sodium dodecyl sulfate), and homogenized. The homogenized tissues were mixed with 15 µl of proteinase K solution (100 mg/ml) and incubated in 55°C water bath overnight. The solution was cooled to room temperature and 1 ml of Trizol reagent (Life Technologies, Inc., Gaithersburg, MD) was added. Total RNA was extracted according to the manufacturers suggestions. The RNA pellet was dissolved in 20 µl of distilled water and one-tenth aliquots were used for quantitation.
Poly(A)+ mRNAs from human fetal and adult livers were purchased from Clontech (Palo Alto, CA). Fetal liver RNA was reported by the manufacturer to have been extracted from a pool of 32 tissue specimens at age 18 to 24 weeks, whereas adult liver poly(A)+ RNA was extracted from a pool of two tissue specimens at age 15 and 35 years.
Reverse Transcription and Polymerase Chain Reaction (PCR)
Actin and p62 primers were synthesized as follows: actin forward primer AGGCCAACCGCGAGAAGATGACC, actin reverse primer GAAGTCCAGGGCGACGTAGCAC, p62FL forward primer 5'-TTGAATTCGCCATGGTGAACAAGCTTTACATCGGGAACC-3', p62FL reverse primer 5'-TTTATGTCGACGGTGTTGGAAGGGCTACATT-3', p62SL forward primer 5'-ATTGAACATGAAACAGGGACC-3, and p62SL reverse primer 5'-ACGTCTGGGCCTTCCGCAGG-3'. The p62FL primers were previously used for the amplification of the full-length coding region of p62 and generated a 1.7-kb PCR product.2 The p62SL primers were designed to readily distinguish between p62 and IMP2 splice variants. The p62 cDNA does not contain the extra 129-bp sequence present in the longer splice variant IMP2 cDNA.2,7 For p62-type and IMP2-type splice variants using the p62SL primers, the expected PCR products are 386 bp and 515 bp, respectively. Reverse transcription and PCR were performed as described with slight modifications.16 Briefly, half µg of poly(A) + RNA or 1 µg of total RNA was reverse-transcribed in 20-µl volume containing 20 pmol oligo(dT)1218 primer. Two µl of cDNA aliquot was pretreated with 5 U of RNase-free DNase (Boehringer Mannheim, Mannheim, Germany) at room temperature and heated at 95°C for 5 minutes. The reaction was then used for PCR in a 50-µl volume containing 10 mmol/L Tris-HCl, pH 8.3, 50 mmol/L KCl, 0.01% (w/v) gelatin, and 0.2 µg of each pair of PCR primers. The PCR conditions used were 25 cycles with denaturation at 94°C for 30 seconds, annealing at 58°C for 30 seconds, and extension at 72°C for 2 minutes. The PCR products were run in 1 or 1.5% agarose gel and stained with ethidium bromide.
| Results |
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Specificity of anti-p62C raised against its C-terminal peptide was
first tested using Western blots. Anti-p62C specifically recognized
recombinant p62 protein (Figure 1
, lane
1), but had no cross-reactivity with recombinant IMP-1 and Koc/IMP-3
(lanes 2 to 3). Anti-p62C also reacted with native 62-kd protein in
HepG2 cells with a weak reaction with a lower molecular size band that
was unidentified (lane 4). It was not reactive with many other cellular
antigens in the HepG2 cell extract as shown by the multiple reactivity
of a lupus autoimmune serum (lane 5). Human HCC liver specimens were
subsequently examined by immunohistochemical analysis. The cancer
nodule from a liver specimen with a poorly differentiated carcinoma
(Figure 2A)
, uniformly showed strong
reactivity to anti-p62C antibody (Figure 2, B and C)
, but not to
preimmune rabbit sera (data not shown). Nonmalignant liver epithelial
cells adjacent to the HCC nodule and fibrous and connective tissue
cells showed absent or barely detectable fluorescence so that the
borders between tumor nodule and nontumor tissue could be clearly
demarcated. The nuclei of tumor hepatocytes were stained with
4,6-diamidino-2-phenylindole (DAPI) (Figure 2D)
to distinguish between
nuclear and cytoplasmic domains. Comparison of signals in Figure 2, C and D
, indicated that p62 was expressed mostly in the cytoplasm of
tumor hepatocytes and visualized most clearly with confocal microscopy
comparing negative contrast and immunohistochemistry (Figure 3)
. The cytoplasmic localization of p62
protein in tumor hepatocytes was consistent with expression in cultured
HEp-2 cells and with that of two homologous proteins (IMP-1 and
IMP-3/Koc) in cultured NIH 3T3 cells as previously
reported.2,7
Anti-p62C antibody also recognized the
cytoplasmic p62 protein in tumor hepatocytes of a well-differentiated
carcinoma (Figure 4, A and B)
. Antibody
absorption experiments were performed to confirm the specificity of
anti-p62C antibody. The anti-p62C antiserum preabsorbed with
recombinant p62 protein lost reactivity to p62 protein (Figure 4C)
,
whereas the antiserum preabsorbed with control, irrelevant recombinant
golgin-97 (a Golgi protein) retained reactivity (Figure 4D)
. A total of
27 HCC liver specimens (20 from China and 7 from the United States)
were examined using anti-p62C antibodies (Table 1)
. Six of 20 Chinese
specimens and 3 of 7 United States specimens (total of 33% in the
combined groups) were shown to have p62 expressed in HCC nodules. These
results were confirmed using anti-p62F antibody that was raised against
the full-length p62 protein (data not shown). Statistically, there was
no correlation of p62 expression with age, sex, and
-fetoprotein
expression level (Table 1)
.
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p62 Gene Is Expressed in Epithelial Cells of Bile Ducts in CCC
To examine whether p62 is expressed in other liver cancers, we
performed immunohistochemical analysis on two available liver specimens
with CCC using anti-p62C antibodies. Proliferating bile ducts were
abundant in the specimen depicted in Figure 5A
, and as shown in Figure 5, B to D
, p62
was expressed in the cytoplasm of epithelial cells of bile ducts (case
28 in Table 1
). However, p62 was not detectable in the epithelial cells
of bile ducts in case 29.
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Liver cirrhosis is considered a high-risk precursor for
development of HCC. Twenty-three specimens from patients with liver
cirrhosis were examined for the expression of p62. As shown in the
upper panels of Figure 6
, cytoplasmic
staining was observed in
5% of hepatocytes in the periphery of
cirrhotic nodules. This pattern of expression was observed in eight
cases and designated as low focal positivity (Table 2)
. The focal expression pattern of these
cirrhotic livers was in clear contrast to the uniform expression of
p62 in HCC (Figures 2 and 4)
. Three other cirrhotic liver specimens
displayed p62 expression not only in hepatocytes in the periphery of
nodules but also in hepatocytes located in the centers of cirrhotic
nodules that were not observed in the low focal positive cases (Figure 6
, bottom panels). The level of p62 expression varied from high to low
intensity in different cells and the total number of p62-expressing
cells varied from 20 to 50%. This expression pattern in the three
cirrhotic livers was designated as high focal positivity (Table 2)
.
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To determine whether the p62 gene was developmentally regulated,
five human liver specimens at different fetal stages (days 50 to 125)
were examined for the expression of p62 gene at the protein level.
As shown in Figure
7, A to D, p62
protein was detectable in hepatocytes in a day 50 fetal liver.
Similar to the day 50 fetus, p62 was expressed in the other four fetal
livers ranging from day 50 to day 125. In contrast, p62 protein was
undetectable in nine normal adult livers (Table 2)
. These data
indicated that p62 gene is expressed in human fetal livers and
seems to be down-regulated in adult hepatocytes during development.
p62 Transcripts in Liver
To investigate whether the p62 gene is regulated at the
transcriptional level, RT-PCR was performed using an equal amount of
poly(A)+ mRNA from either human fetal or adult
livers. A 1.7-kb PCR product containing the open reading frame of
p62/IMP-2 cDNA from fetal livers could be abundantly amplified with
p62FL primers (Figure 8
, lane 5), whereas
the product from adult livers was barely detected (lane 6). As a
control, an actin fragment amplified from the same batch of cDNA showed
no difference in amount of cDNA (Figure 8A
, lanes 3 and 4). The 1.7-kb
PCR DNA product from fetal livers was subcloned and five recombinant
clones were identified. The nucleotide sequences of all five
recombinant clones were identical to those of original p62
cDNA,2
a splice variant that does not contain the extra
129-bp nucleotide present in IMP-2 cDNA,7
suggesting that
the shorter p62 rather than the longer IMP-2 form was selectively
expressed in the fetus.
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| Discussion |
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The human IGF-II gene is generated from several mRNAs with different 5'UTRs each associated with distinct promoters P1 to P4, but all having identical coding regions and 3'UTRs.18 Promoters P2, P3, and P4 are active in fetal tissues and transformed cells where they generate mature transcripts of 5.0, 6.0, and 4.8 kb, respectively, whereas promoter P1 is only used in adult liver giving rise to a transcript of 5.3 kb. Cariani and colleagues19 found a 40- to 100-fold increase in IGF-II mRNA in 9 of 40 liver cancer samples and this was primarily related to expression of two fetal (6.0 and 5.0 kb) species. It would be of interest to know whether this remarkable increase in fetal IGF-II mRNA in HCC is in some way modulated by expression of the p62 form of RNA binding protein.
Carcinogenesis is a multistep process involving not only genetic mutations in oncogenes and tumor-suppressor genes but also other complex factors conferring tumorigenic traits.20,21 It is possible that one of these traits could be related to overexpression or increased stability of a growth factor such as IGF-II. The fact that we found p62 expression in some cells in cirrhotic nodules might indicate that p62 is associated with hyperproliferating cells. At least two lines of evidence indicate that the periphery and other areas of cirrhotic nodules are regions of proliferative activity. Proliferating cell nuclear antigen has been shown to be expressed in these regions as well as hepatocyte growth factor.22-25 p62 expression pattern was not present to the extent found in HCC in which all cells exhibited cytoplasmic p62 immunoreactivity. The question arises whether this expression of p62 in a number of liver cirrhosis patients might be of prognostic value because this might be a marker of subsequent malignant transformation. However, it was not possible to do follow-up studies to determine whether any of the three patients with high focal expression of p62 might have ultimately developed HCC, because of constraints in revealing patient identity because of the fact that these studies were restricted to archival specimens and knowledge of patient identity was prohibited.
The most widely studied humoral autoimmune response in cancer has been
related to the p53 tumor-suppressor protein. Autoantibodies to p53 have
been found in general in
20% of patients with cancer and have been
shown to be primarily associated with p53 accumulation in the tumor
mostly related to p53 gene missense mutations.26
Although
the sensitivity was low, the specificity of anti-p53 for cancer was
96%. It has been reported that in individuals who were at high risk
for cancer such as workers exposed to environmental mutagens or heavy
smokers, the presence of anti-p53 might be a predictive factor in
cancer development.26
There is growing evidence that a number of intracellular proteins with RNA-binding motifs are associated with cancer. p62 belongs to a family of proteins that have two types of RNA-binding motifs, the RNA recognition motif and the heterogeneous nuclear RNP-K homology or KH domain.27,28 Mueller-Pillasch and colleagues12 have shown that a highly homologous protein to p62 called Koc is preferentially expressed in pancreatic and other cancers. Ross and colleagues10 have shown that a murine protein, also highly homologous to p62 binds to c-myc mRNA. This murine protein binds to a sequence in the coding region of c-myc mRNA called the instability determinant and binding of the protein to this region of c-myc mRNA shields it from endonucleolytic cleavage. Of further interest is the fact that the human homologs of this group of proteins have been demonstrated by Nielsen and colleagues7 to bind in a highly specific manner to leader 3 fetal mRNA encoding IGF-II. This fetal IGF-II mRNA has a specific 5' sequence that is bound by these proteins. The importance of this finding with relationship to cancer is the fact that IGF-II has been shown to be overexpressed in human cancer19,29-31 and mice transgenic for IGF-II have been shown to develop malignancy and organomegaly of different tissues.32,33 In a SV40 large T-antigen transgene model, pancreatic tumors were noted to be associated with IGF-II mRNA expression.34 In a model of HCC in hepatitis B virus envelope transgenic mice,35 examination for abnormalities in structure and expression of a large panel of oncogenes and tumor suppressor genes, including ras, myc, fos, abl, src, Rb, and p53, only overexpression of IGF-II was found.
Aberrant expression of other RNA-binding proteins in human cancer has been increasingly recognized. The Hu proteins are RNA-binding proteins that contain three RNA recognition motifs.36-39 These proteins have been shown to bind the AU-rich regions of 3'UTRs in mRNAs encoding early response genes such as c-myc, c-fos, and GM-CSF.39,40 The binding of Hu proteins to the AU-rich resulted in the stabilization and increased translatability of the mRNA transcripts.40-42 The Hu proteins are expressed in cancers from lung, breast, ovary, and testis where the expression is aberrant because the Hu proteins are primarily neuronal proteins. Certain cancer patients with aberrant expression of Hu proteins have sensory neuropathies called paraneoplastic neurological disorders and produce autoantibodies to Hu.37 In a similar vein, the nucleocytoplasmic shuttling protein hnRNP A2/B1, encompassing N-terminal RNA recognition motifs, exhibits a characteristic spatiotemporal expression during mammalian lung development,43 and is also expressed in large amounts in lung cancer.44 Therefore, several families of RNA-binding proteins exhibit an oncofetal behavior to accommodate a state of increased cellular proliferation. The role of aberrantly regulated RNA-binding proteins in promoting tumorigenesis could be at the posttranscriptional level by way of modulating the stability or function of certain crucial mRNAs.
From the perspective of the production of human autoantibody and autoimmunity, the present report on the enhanced expression of p62 in 33% of liver cancer nodules examined, together with our early observation that some patients developed novel autoantibodiesincluding anti-p62during the transition from chronic liver diseases to HCC,2 suggest that anti-p62 antibodies may be produced in response to the enhanced expression of p62 in cancer cells. It is not clear at the present time whether the aberrant expression of a fetal protein such as p62 in the adult organism is by itself sufficient to induce an autoimmune response or whether other additional factors are required.
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| Acknowledgements |
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| Footnotes |
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Supported by National Institutes of Health grant CA56956 and the Danish Cancer Society.
This is publication 13911-MEM from The Scripps Research Institute.
Accepted for publication May 25, 2001.
| References |
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