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From the Department of Pathology,*
Academic MedicalCenter, Amsterdam; the Department ofPathology,
Academic Hospital, Groningen; andthe Department of Immunology,
UniversityHospital, Erasmus University, Rotterdam, the Netherlands
| Abstract |
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gene transcripts
were amplified and sequenced from samples of approximately 50 tumor
cells, isolated from frozen tissue sections by laser
microdissection. We identified many different subclones and obtained
limited evidence of subclone dominance in individual follicles.
Remarkably, several subclones were found scattered over
different follicles. All samples contained IgM- and IgG-expressing
tumor cells with, in general, non-identical mutation
patterns, which is not in support of ongoing class switching.
Accordingly, no switch circle recombination products were
found. The findings indicate that the neoplastic follicles lack the
organization and functions typical of reactive germinal
centers.
Several in situ studies have provided insight into the selection and differentiation processes that take place within germinal centers.5-7 Both anatomically and functionally, germinal centers seem rather closed compartments. It has been shown that, although a single B cell clone can be seeded into multiple GCs, clonal evolution thereafter occurs independently in these GCs.7,8 The stringency of selection within this environment was demonstrated by the fact that the B cell populations of individual GCs, initially being highly polyclonal, become oligoclonal or even monoclonal within a relatively short time span.5,6,9
Follicular lymphoma (FL) is considered as the prototype of a germinal-center cell-derived B cell non-Hodgkins lymphoma,10 as the centroblast- and centrocyte-like tumor cells proliferate in nodular networks of non-neoplastic FDCs. Many investigators have demonstrated that FLs carry heavily mutated IgV genes.11-13 Moreover, based on the findings of intraclonal IgV gene diversity and the co-presence of different heavy (H) chain switch variants in some FLs, it was concluded that the processes of somatic hypermutation14-17 and H chain isotype switching18,19 remain active in these neoplasms. Finally, as the mutation patterns in the IgV genes of FLs were found to be highly comparable to those in normal antigen-selected B cells, it was proposed that FL cells are, during their malignant growth, still being clonally selected on basis of the antigen-binding capacity of their BCRs.15,20-22
We have recently studied a large panel of FLs.13 These analyses indicated that FLs may not retain the capacity to somatically mutate. Additionally, we obtained evidence for subclone selection instead of clonal BCR evolution over time.23 These findings challenged the concept of antigen-driven lymphomagenesis.
We here analyze an interesting case of a FL that harbored, in all tumor follicles, IgM+ and IgG+ tumor cells of the same clonal origin. By in situ analyses using laser microdissection we aimed to obtain insight in the composition of the neoplastic follicles, the process of isotype switching and the repertoire of infiltrating T cells within the tumor compartment. The results again indicate that FL cells may have retained less properties of normal GC B cells than is generally assumed.
| Materials and Methods |
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Fresh tissue of FL no. 8 was obtained from surgically removed lymph nodes from the departments of pathology of the Westeinde Hospital, The Hague, the Netherlands and was kindly provided by Dr. E.C.M. Ooms. The patient, a 48-year-old woman, presented with a FL in 1983 (FL 8-83). Complete remission was achieved after chemotherapy. After irradiation of a local relapse, in 1988, a systemic relapse developed in 1992 (FL 8-92). As control tissue, fresh human tonsil was used. All tissues had been snap-frozen and stored in liquid nitrogen until usage.
Immunohistochemistry
Cryostat sections were immunohistochemically stained as
described,24
using monoclonal antibodies specific for
human CD21L (DRC-1, Dako, Glostrup, Denmark), Bcl-2 (clone 124, DAKO),
and for Ig heavy and light chain isotypes (all from Dako except for
anti-IgM, -
, and -
, which were obtained from Becton Dickinson,
Erembodegem-Aalst, Belgium). Heavy chain isotype expression of the
lymphoma of patient 8 was also assessed by immunofluorescence. Briefly,
acetone-fixed tissue sections were incubated at 37°C with the primary
antibody (anti-IgM, -IgG, -IgA, -IgD, -
or -
; Dako), washed three
times in phosphate-buffered saline (PBS), and incubated for 30 minutes
with swine-anti-rabbit, labeled with FITC (Dako).
Microdissection of Samples
Microdissection out of frozen sections was performed with a
laser-microbeam system (PALM GmbH, Bernried, Germany). The potential
risk of RNA carry-over by cutting was evaluated using slides with
membranes on which tissue of two distinct lymphomas was mounted
together. These analyses indicated that cell-specific results were
obtained and that out of microdissected membrane located adjacently to
the tissue no polymerase chain reaction (PCR) products were amplifiable
by reverse transcriptase (RT)-PCR (data not shown). Similar results
were reported by others even after a brief fixation and staining
procedure.24
If, however, microdissection is possible
using polarized light only, like in the present study, we use untreated
sections to exclude the risk of RNA carry-over. Thus, here 10-µm
frozen sections were dried but were left unfixed and unstained before
use. For RNA analyses, samples of approximately 50 cells were dissected
from lymphoma 8-83 (Figure 3)
, catapulted into 3 µl of cDNA
reaction mixture (see below), and stored on ice until cDNA synthesis.
For DNA samples, approximately 100 cells were dissected from follicles
of hematoxylin-stained tissue sections of lymphoma 8-83 and its
relapse, 8-92 and from normal tonsil. Tissue samples were
"catapulted" into 5 µl of water.
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RNA of bulk material was isolated from frozen tissue sections using the TRIzol reagent (Life Technologies, Breda, the Netherlands) and cDNA was synthesized as described.25 From the microdissected samples, cDNA was synthesized without prior RNA isolation. The microdissected samples were incubated in a total volume of 20 µl of cDNA reaction mixture.25 The reaction was performed for 15 minutes at 37°C. Subsequently, the enzyme was inactivated during 10 minutes at 95°C. After cDNA synthesis 20 µl of water was added.
DNA Preparation
For DNA samples, 15 µl of 0.25 mol/L proteinase K in 1X Taq buffer was added (20 mmol/L Tris-HCl, 50 mmol/L KCl, pH 8.4). After incubation overnight at 56°C, the enzyme was inactivated for 10 minutes at 95°C. Bulk DNA was isolated from frozen tissue sections using the DNAzol reagent, according to the manufacturers instructions (Life Technologies).
Amplification of the VH Gene
In the first rounds of amplification 1 µl of cDNA reaction
mixture was used in a 25 µl PCR reaction volume using a forward
primer with specificity for the leader of the VH3
gene family in combination with a reverse primer specific for Cµ
(Cµ1-: 5'-CGTATCCGACGGGGAATTCTC-3'), or C
.25
Next, a
nested PCR was performed using 2.5 µl of the first PCR product in a
25-µl reaction. PCR reactions were performed with a
VH3 primer that anneals in the FRI region
(VH3FR: 5'-TCCCTGAGACTCTCCTGTG-3') combined with
the appropriate reverse primer either Cµ or C
2.25
The
PCR consisted of 50 cycles under conditions that were the same as
described previously for the CDR3-specific PCR.25
PCR
products were analyzed on a 1% standard agarose gel (Sigma, St. Louis,
MO). All PCR reactions and the subsequent sequencing reactions were
performed in duplicate to obtain a reliable consensus sequence of a
sample. Specificity of the PCR results was further controlled using
many buffer-only samples to which no cDNA was added. These controls
were in all instances negative.
Amplification of Switch Circle Fragments
Quantification and subsequent stratification of the amount of
amplifiable DNA was performed using a PCR on the
ß2 microglobulin gene (ß2m). The primers used
were 5'-AGCATTCAGACTTGTCTTTCAG-3' and 5'-GATGCTGCTTACATGTCTCG-3', which
yield a product of 776 base pairs from DNA. The PCR protocol for this
ß2m-PCR was the same as for the amplification
of the VH gene. S
-Sµ switch circle fragments were amplified in
25-µl reaction mixtures from 250 ng or less DNA, using the upstream
I
1/2 primer, in combination with the downstream Sµ
primer.26
As positive controls, 10 copies of artificial
construct plasmids27
were amplified. All plasmids
(S
1-Sµ, S
2-Sµ, S
3-Sµ, and S
4-Sµ) could be amplified
using this PCR approach (data not shown). The PCR samples were first
incubated at 95°C for 4 minutes, then 40 cycles of 1 minute at
95°C, 1 minute of 68°C and 1 minute of 72°C were performed,
followed by 10 minutes at 72°C. Next, a nested PCR was performed with
2 µl of PCR product of the first PCR in a 25-µl PCR, using the S
and Sµ primers.26
The same PCR mixtures were used as for
the amplification of the VH gene, except that 100
nmol/L of each primer was used and Taq platinum polymerase
(Life Technologies). With this PCR, one switch circle copy in at least
1000 cells is detectable. The PCR products were analyzed on a 1%
agarose gel (Sigma) and subsequently sequenced to confirm their origin.
DNA Fiber Fluorescence in Situ Hybridization
The configuration of the constant heavy chain gene locus of both time points of FL 8 was analyzed by DNA fiber fluorescence in situ hybridization (FISH) as described.28 Probes for the J region, the different constant region genes and the BCL-2 locus were used. At least 20 fibers representative for each configuration were analyzed out of tissue of each time point.
Amplification and Analysis of Clonality of the Variable Genes of
the TCR-
Locus
The T cell receptor-
(TCRG) gene
rearrangements were amplified from DNA of microdissected samples. The
first PCR was performed with the PCR primers as
described,29
except that Taq platinum
polymerase (Life Technologies) was used instead of AmpliTaq Gold
polymerase (PE Biosystems, Foster City, CT). For the second, nested
PCR, the sequencing primers29
were used with the same PCR
protocol, with exception that 2.0 mmol/L MgCl2
was used and 0.25 µmol/L of each primer. The products were first
analyzed on a 1% agarose gel and subsequently by heteroduplex
analysis.30
Briefly, the PCR products were denatured for 5
minutes at 95°C, then they were allowed to reanneal at 4°C for at
least 1 hour. The resulting homo- and/or heteroduplexes were analyzed
on a 6% non-denaturing polyacrylamide gel and visualized by staining
with ethidium-bromide.
Cloning and Sequencing of PCR Products
Both strands of the PCR products were either directly sequenced with an ABI sequencer (Perkin Elmer Corporation, Norwalk, CT) using the dye-terminator cycle-sequencing kit (Perkin Elmer), or first cloned into pCR2.1-TOPO vectors (Invitrogen, Groningen, the Netherlands) and transformed into TOP10 bacteria (Invitrogen). Subsequently, both strands of the inserts of a clone were sequenced.
| Results |
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We previously analyzed the VH and
variable light (VL) chain genes of a large panel
of FLs of different Ig isotypes. Among these, two biopsies of FL 8 were
included.13
Interestingly, in all follicles of the
presentation biopsy of 1983 (FL 8-83) both IgM/
and IgG/
tumor cells were found by immunofluorescence as well as
immunohistochemically (Figure 1)
.
Molecular analyses revealed that these assumed isotype switch variants
indeed carried the same VDJ rearrangement which contained 30 and 35
somatic mutations compared to the germ-line gene V323, respectively.
This FL expressed the L16 V
chain gene, which
harbored 20 somatic mutations (data not shown). At the second time
point (FL 8-92), 9 years later, only IgG-expressing tumor cells were
found of the same clonal origin (data not shown). In the V323 gene,
35 somatic mutations were found compared to the germ-line gene, 30 of
which were shared with the IgM and IgG sequences of the first time
point. In the
light chain one extra replacement mutation was
present (data not shown). At both time points, significant sequence
variation was found between cloned VH products:
the means of this intraclonal variation were 5.0, 4.0, and 1.3
mutations/clone compared respectively to the consensus IgM and IgG
sequences of FL 8-83 and the consensus IgG sequence of FL 8-92, as
determined on crude tissue.13
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To assay the distribution of the subclones within the tissue of FL
8, we microdissected a total of 47 samples from 19 neoplastic follicles
from frozen tissue sections (Figure 2)
.
Cells were microdissected from unstained tissue sections. Of each
sample, containing approximately 50 cells, the VH
genes were amplified and sequenced. All PCR and sequence reactions were
carried out in duplicate and consensus sequences thus obtained of each
sample were compared. The overall PCR efficiency was 86%. All
VH PCR products contained the known VDJ
rearrangement of this FL. From 5 of 47 samples the duplicates were not
reproducible (the IgM-derived sequences of sample 11a and 17b, and the
IgG-derived sequences of sample 9c, 15b, and 20b), ie, point mutation
differences were observed, most likely due to the presence of too many
different subclones without clear dominance of one of them. The
sequences that could be reproduced are depicted in Figure 3
. The variation found within the IgM and
IgG sequences of the samples was 2.7 and 3.1 somatic mutations per
IgVH sequence, compared to the IgM- or
IgG-derived consensus sequences established in crude tissue analyses,
respectively.13
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To get more insight into (sub)clonal diversity, three to eight
bacterial clones were made from the PCR products of samples 2µ,
3aµ, 3bµ, and 9a
, and the respective inserts were sequenced
(Figure 4)
. Significant intraclonal
variation was found, which ranged from 1 mutation per clone (sample
3aµ) to 4.6 mutations per clone (sample 9a
). It must be emphasized
that in these calculations Taq errors may be present. We
determined the frequency of Taq polymerase errors to be
0.14% in our experimental setup, which would amount to an average of
0.4 mutations per sequence for these clones.25
In sample
3aµ and 3bµ, these clonal analyses were concordant with the
consensus sequences obtained by directly sequencing the PCR products
derived from these samples (Figure 4)
. However, in sample 2µ and
9a
, the consensus sequence derived from the clones differed from the
directly sequenced product. This may be erroneous, due to the low
number of analyzed clones, or be a reflection of polyclonality.
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Immunohistochemically, no clear compartmentalization was found of
the IgM- and IgG-expressing cells. Accordingly, PCR analyses revealed
that all dissected samples contained both IgM and IgG transcripts (data
not shown). In all samples, except one, nucleotide differences between
the isotype-switch variants were observed. Only sample 2 contained an
identical IgM- and IgG-expressing subclone. The average number of point
mutation differences between the class switch variants within the
individual samples was 7.2, ranging from 0 (sample 2) to 13 (sample 3a)
differences. These findings are not in support of recent isotype
switching of the tumor cells. Therefore, to search for signs of active
switching, tissues of both time points of FL 8 were analyzed for the
presence of S
-Sµ switch circles by PCR and sequencing (Figure 6)
. Whereas switch circle products were
abundantly amplified from DNA of three different tonsils, from neither
time points of FL 8 were specific switch circle products obtained
(Figure 6)
.
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To further address the isotype switching process in this FL, the
configuration of the constant heavy chain gene locus of both time
points of FL 8 was analyzed by DNA fiber fluorescence in
situ hybridization (FISH).28
Both the functional
allele and the translocated allele were detected with probes specific
for the J region, the different CH genes and the
BCL-2 locus, respectively. Except for one translocated
allele, two different functional alleles were detected in the sample
from FL 8-83, indicating that the
isotype-switch variants were derived from different tumor cells (Figure 7
and Table 1
). The first functional
allele was a VDJ rearrangement adjacent to Cµ and 4 C
genes of the
3' CH cluster, with a downstream deletion of 2
C
and 1 C
gene. The second allele showed a VDJ rearrangement
adjacent to a C
gene of the 3' CH cluster. By
fiber FISH analysis of FL 8-92, we detected that the
translocated and the functional VDJ-C
allele were identical to those
of FL 8-83. In accordance with immunohistochemistry and PCR analyses,
no VDJ rearrangement adjacent to Cµ was found in FL 8-92 (Figure 7
and Table 1
).
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The proposed role for BCR ligands in lymphomagenesis could imply
that the tumor cells function as antigen presenting cells for the
intrafollicular T cells that might in turn provide essential growth
signals. To acquire more insight into the T cell repertoire of this FL,
we analyzed T cell receptor-
(TCRG) variable genes
of areas microdissected from the biopsies of both time points of FL 8.
Since the TCRG locus, which has a limited repertoire, is
rearranged early in T cell development and remains unaltered even in
TCR
ß+ cells,31
TCRG
rearrangements can be used as clonality markers. Samples of
approximately 100 cells were dissected from follicles of FL 8-83, its
relapse 8-92, as well as from germinal centers of a tonsil tissue
section. From the microdissected samples of FL 8 and tonsil, PCR
products were obtained of the four different V
families. The
frequencies of occurrence of these families were strikingly similar
between the FL and the tonsil (Table 2)
,
with the exception that in FL 8-83 V
IV family products were
detected in 11 of 33 samples (33%), compared to 11% and 13% of the
samples originating from the FL 8-92 and tonsil, respectively. All
PCR products found in FL 8, which appeared as a sharp band in
heteroduplex analyses, were sequenced. Finally, of 13 V
I PCR
products (8 from 8-83 and 5 from 8-92), 6 V
II products (4 from
8-83 and 2 from 8-92), 10 V
III products (4 from 8-83 and 6
from 8-92) and 5 V
IV products (3 from 8-83 and 2 from 8-92),
readable sequences were obtained (data not shown). In these analyses,
not a single V
-J
rearrangement was found more than once, strongly
suggesting there is no dominating T cell clone in FL 8. It must be
realized that in contrast to reactive germinal centers in tonsil or
lymph node tissue, in which also polyclonal T cells have been
described,32,33
a FL consists of cells of a single
antigen-receptor specificity. By consequence the potential repertoire
of peptides presented by MHC class II molecules is restricted. Thus,
despite this uniformity of "antigen presenting" tumor cells no
indication for oligoclonality of T cells was obtained.
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| Discussion |
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transcripts present herein were analyzed. We identified many subclones
scattered over the different follicles. Four out of 13 identified IgM
subclones and 2 of the 16 IgG subclones were found in more than one
follicle, some at relatively large distances of each other (Figure 5)
(samples 2 and 9a) transcripts, was virtually identical to that of the
dominant IgG clone in the relapse tumor 8-92, 9 years later. This
remarkable evidence for selection of pre-existent subclones was
reported previously by us.23
Also in longitudinal studies
on B cell lymphomas reported by others,16,17,21,22
successive IgV gene patterns were compatible with subclone selection.
Apparently, such subclones can finally obtain growth advantage most
likely on basis of additional genetic alterations unrelated to the
configuration of the BCR.
Our analyses further showed that in all microdissected tissue samples,
both IgM and IgG transcripts are present (Figure 3)
. The fact that by
fiber FISH, one translocated allele and two distinct functional alleles
were found in FL 8-83 (data not shown) indicates that these
transcripts are not the result of trans-splicing but are
indeed derived from different cells. In general, non-identical mutation
patterns were found in the isotype-switch variants of individual
samples, except for sample 2. The average number of point mutation
differences between the IgM- and IgG-derived VH
sequences of individual samples was 7.2. Moreover, despite significant
intraclonal variation in both IgM- and IgG-derived sequences, the IgM
sequences resembled each other more than they resembled the IgG
sequences, and vice versa. These findings argue against
active class switching. The switch circle-specific PCR analyses support
this notion. Abundant switch circle recombination products were
amplified from tonsil tissue DNA (Figure 6)
, in which only a minor cell
fraction is likely to have undergone a class switch. Among these
class-switched cells, a minority will still harbor the excision
circles. By contrast, from DNA of the FL, consisting of an almost pure
population of isotype switch variants of a single clone, no specific
switch circle products were amplified by this sensitive PCR method.
This and the fact that we found only one type of VDJ-C
allele by
fiber FISH, present in identical configuration in FL 8-92 (Figure 7
and Table 1
), strongly argues against active class switching. Although
we can formally not rule out that class switching occurs at very low
frequencies in this FL, our findings demonstrate that the tumor cells
are not frozen in a stage in which the IgM+ cells
are all on the verge of H chain isotype switching. Most likely, the
isotype switch took place early after initial transformation, but not
before a substantial amount of somatic mutations had been introduced.
In the literature, change of isotype expression in time has been
documented in some FLs, in one case concurrent with transformation to a
diffuse lymphoma.18,19
In these reports however, no
control PCR analyses were performed to exclude that the
isotype-switched clones had already been present at low frequencies at
the early time points.
It is questionable whether and to what extent the principle molecular and cellular processes occurring in normal GCs, ie, somatic diversification, H chain isotype switching and BCR-based clonal selection, occur in FLs. The concept of antigen-driven lymphomagenesis relies strongly on the capacity of the tumor cells to somatically mutate their IgV genes together with the observed non-random IgV gene mutation patterns. Many investigators consider intraclonal V gene sequence diversity of lymphomas as an indicator of an active mutation machinery. We previously pointed out that, considering the significant tumor volume of FLs in general and thus the number of cell divisions that must have occurred, the degree of intraclonal sequence diversity in this and other FLs is in fact remarkably low and indicates that, like the class switching activity, the mutational activity in advanced stage FLs must be very low or even absent.13 This contention was supported by the finding that in general the degree of intraclonal sequence diversity within FLs decreases instead of increases over time13,16,17,21,34 Stringent selection processes must therefore occur which, based on the available evidence for selection of pre-existent subclones,23 are not necessarily BCR-guided. As we found no indication of T cell oligoclonality within this FL either, we obtained no circumstantial arguments for a role of BCR ligands in lymphomagenesis via antigen-specific T cell help, as has been proposed for low-grade gastric mucosa-associated tissue (MALT) lymphomas.35-37
The notion that FLs are functionally more crippled than generally assumed seems not inconsistent with their histology. In most FLs, the neoplastic follicles are irregular and in part ill-defined. This can be well appreciated in immunohistochemical stainings with the DRC-1 (anti-CD21L) antibody, in which the FDC networks, unlike normal germinal centers, often have a non-homogeneous, "moth-eaten" appearance. Based on these architectural characteristics, it can be conceived that the formation of new follicles is a process of budding off from pre-existent tumor nodules rather than the result of seeding by founder cells. On the other hand, the fact that individual tumor clones are also found at relatively large distances and that most FLs are systemic indicates that the cells must be actively trafficking and, on recirculation via lymph and blood, home to distant follicles.38 Hence, whereas normal GCs are rather closed compartments7 that allow for independent clonal evolution of the included B cells, the neoplastic follicles appear to permit interfollicular tumor cell trafficking, as has previously also been proposed by Dogan et al.39 This lack of spatial organization in FLs is likely to interfere with strict BCR-based selection processes.
Acknowledgments
We thank H.B.P.M. Dijkman for technical assistance with the PALM and J.B.G. Mulder for assistance with immunohistochemistry. We thank I.L.M. Wolvers-Tettero and E.J. van Gastel-Mol for advice on the TCRG analyses. The artificial switch circle constructs were generously provided by Dr. E.E. Max. We also thank Dr. E.C.M. Ooms and C.C.H. Vellema for providing tissue material.
| Footnotes |
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Supported by grant AMC 95957 from the Dutch Cancer Society. C. J. M. van Noesel is a fellow of the Netherlands Royal Academy of Arts and Sciences.
Accepted for publication November 29, 2001.
| References |
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light chains are affected by the antigen selection process, but to a lesser degree than their partner heavy chains. Br J Haematol 1997, 96:132-146[Medline]
gene usage of tumor-infiltrating T lymphocytes in primary gastric malignant B cell lymphoma. Virchows Arch 1995, 426:11-18[Medline]
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