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From the Departments of Pathology and Laboratory Medicine*and Medicine,
Boston University School of Medicine and Boston Medical Center, Boston; and the Department of Epidemiology and Biostatistics,
Boston University School of Public Health, Boston, Massachusetts
| Abstract |
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Candidate precursors include proliferative lesions; depending on their histology, varying proportions of these lesions demonstrate LOH, often at the same sites as breast carcinomas.3 Given the frequency of LOH in proliferative lesions, it is not surprising that LOH has been detected recently in histologically normal epithelium, ie, ducts and terminal ductolobular units (TDLUs).4-7 LOH, often at sites implicated in breast carcinogenesis, has been found in several small series examining normal-appearing breast epithelium from women with and without breast cancer, in tissue both adjacent to and distant from the primary tumor, and with an incidence possibly increasing with cancer risk. Reproducible LOH indicates that a substantial proportion of the samples cells contain an identical DNA abnormality, compared to the individuals normal somatic pattern. Therefore, samples with LOH likely contain a genetically aberrant, clonal population. It is unclear whether histologically normal epithelial samples with LOH represent early precursors in breast cancer, markers of increased risk, or background abnormalities.
To begin to clarify this issue, we evaluated LOH in histologically normal human breast epithelium and co-existing cancers. We microdissected multiple normal epithelial samples (primarily TDLUs) and co-existing in situ and invasive malignant lesions from 18 breast cancer cases. We examined their DNA for LOH at 21 microsatellite loci selected primarily for their location at chromosome regions that undergo LOH frequently in breast cancer. We speculated that within a given case, we could identify normal and malignant samples with a possible precursor-product relationship, when the samples had LOH at the same locus (particularly if they were adjacent). In contrast, normal and malignant samples with different LOH should represent distinct clones. We also conjectured that determining the sites and extent of LOH in morphologically normal epithelium should help elucidate early genetic events contributing to the development of sporadic breast cancer.
| Materials and Methods |
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Eighteen consecutive lumpectomy or mastectomy specimens were selected at random from the Department of Pathology, Boston Medical Center, archives. Demographic characteristics of the catchment area suggest few cases would represent familial breast cancer. Review of the pathology findings also suggested a nonselected population: 17 of 18 cases were ductal carcinomas, 1 case (case 2008) was lobular, 2 cases (cases 0071R and 0071L) represented synchronous bilateral disease (analyzed separately); 80% of CIS had some evidence of high-grade disease (high nuclear grade, comedo histology, or necrosis) and 66% of invasive cancers were grade III/III.
Existing slides were reviewed by a single experienced breast pathologist (Adelas M) who identified multiple examples of normal ducts/TDLUs, and in situ and invasive carcinoma. Stroma or nodal tissue was available in 7 of 18 cases.
Microdissection and DNA Extraction and Quantitation
After identifying areas of interest on the hematoxylin and eosin (H&E)-stained slides, seven serial sections were cut from the corresponding blocks, and the top and bottom sections were stained with H&E. After reconfirming histology in these stained slides, they were used to guide microdissection of areas of interest from the unstained sections. Microdissection was performed using a laser capture microdissection apparatus (Arcturus Engineering, Mountain View, CA).8 By counting nuclei and considering a cell to be 20 µm in diameter, we estimated that we obtained 200 to 1000 cells per normal-appearing sample, and considerably more cells per tumor sample. DNA was extracted using standard techniques that we have described previously.5,9 DNA for control reactions was quantitated fluorimetrically (PicoGreen dsDNA Quantitation Kit; Molecular Probes, Eugene, OR).
Microsatellite Selection
Twenty-one microsatellite markers, located on 10 chromosomal arms, were selected for utility in fixed breast tissue based on the following criteria: 1) location at regions relevant to breast tumorigenesis (ie, regions of LOH in early-stage carcinomas, or at sites of identified or putative tumor suppressor genes). Markers at regions not believed relevant to breast tumorigenesis were also included; 2) size of amplified fragment <200 bp for reliable use in fixed tissue that produces fragmented template DNA; 3) highly polymorphic (ideally >75% heterozygosity); 4) ability to be multiplexed together without adverse interaction. Chromosomal regions and markers used were as follows: 1p: D1s468; 1q32-42: D1s549, D1s213; 3p24: D3s1283; 7q31: D7s486; 11p15: THO1, D11s2071; 11q13: PYGM; 11q23: D11s1818, D11s1819; 16q22-24: D16s265, D16s402, D16s413, D16s512; 17p13.1: TP53, D17s796, D17s525; 17q12-21: D17s1290, D17s579, D17s855; Xq11-12: AR. Primers were purchased from Research Genetics (Huntsville, AL) or synthesized commercially.
Polymerase Chain Reaction (PCR)/Electrophoresis
Six multiplexed PCRs were performed using
1/10 volume of the DNA solution as a template in a 50-µl reaction, 30 to 35 cycles of amplification, incorporation of
-32P-dCTP, and annealing temperatures between 55 to 60°C. One-fifth of the amplified products was electrophoresed through 7% denaturing gels that were then exposed to autoradiography film.
Determination of AI
The normal pattern at each microsatellite in each individual was defined as the pattern in stroma and nodes, or the predominant pattern in normal epithelium. LOH was defined at heterozygous loci as an imbalance of allele intensities >25%, ie, when (n1)(t2)/(n2)(t1) >1.33 or <0.75, where n1 = normal samples larger allele, n2 = normal samples smaller allele, t1 = test samples larger allele, t2 = test samples smaller allele. This degree of AI indicates that a substantial proportion of the cells within a sample contains the same DNA abnormality and likely represents the presence of a clonal population. Abnormal results were demonstrated at least twice with equivalent results. At certain loci AI probably reflects increased copy number rather than loss of an allele. Distinguishing between these possibilities is important conceptually, but would not change data analysis. Therefore, all AIs were labeled as LOH.
The proportion of LOH for each arm, or fractional allele loss (FAL), was calculated in each case as: number of LOH/number of observations per arm. This adjusts for multiple samples that may have separate patterns of LOH, which was common in normal-appearing samples. For each histology, overall FAL was calculated as the mean of all 10 arms FAL.
Statistical Tests
The exact Wilcoxon test was used to assess differences in median sample number between cases with versus without LOH in normal-appearing tissue. A t-test assessed differences in mean AI in control reactions versus abnormal duct/TDLUs. To assess global differences in FAL across arms within each histological type of tissue, we used analysis of variance methods that accounted for the correlated multiple observations coming from the same individual and weighted for the number of observations on which the calculation of FAL was based, using Proc Mixed in SAS.10 We also used this strategy to evaluate specific hypotheses, ie, that different levels of LOH existed between specific arms in normal-appearing samples. Because of the weighting strategy, this approach adjusts for different numbers of samples per case and observations per sample.
| Results |
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From 18 independent breast cancer-containing lumpectomy or mastectomy specimens, we microdissected 173 lesions including normal-appearing terminal ductal-lobular units (TDLUs), or rarely simple ducts, CIS, invasive carcinomas (Inv), and when available, uninvolved lymphoid tissue or stroma. Figure 1
illustrates a representative microdissection. Table 1
lists the number of samples per histology and specimen. Samples were taken from all available blocks: 28 of 109 ducts/TDLUs located on the same block as the cancer, the remainder came from elsewhere in the specimen.
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To establish the rate at which LOH might mistakenly be identified in normal-appearing ducts/TDLUs (ie, a false-positive rate), we performed 40 independent control PCRs. Each reaction contained 125 pg of lymph node DNA that had been microdissected and extracted using the same conditions as the breast samples. This template (reflecting the DNA content of
20 cells, our lowest estimated cell number per reaction), was amplified at two markers (D1s549 and D17s579). We found limited variation in allele ratios among these 40 reactions, with the mean allele ratio = 1.06, SD = 0.25 (Figure 2)
. Eight of 40 (20%) reactions had allele ratios outside our predetermined cutoff values (>1.33, <0.75). Because our criteria for LOH require at least two independent demonstrations of abnormal allele ratios, this indicates that our estimated rate of false-positives is, at most, (0.2) x (0.2) = 0.04, or (4%). It is probably closer to 2% because artifactual imbalances should affect each allele half the time.
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Using multiplex PCR, DNA from each microdissected breast sample was analyzed at 21 microsatellite markers on 10 chromosome arms. On average, 11 markers were informative and interpretable per case. Some LOH could have been missed because of admixture of truly normal cells. Table 2
summarizes these data.
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Eight of 18 (44%) cases contained one or more ducts/TDLUs with LOH. Overall, 14 of 109 (13%) normal-appearing samples contained 14 LOH, consistent with proportions reported previously.5 Because the 95% confidence interval for this 13% rate is 7 to 19%, but the maximal estimated rate of artifactual LOH is 4%, these abnormalities are unlikely to be because of chance. In addition, the magnitude of AI in these 14 ducts/TDLUs was greater than in the eight control reactions whose ratios outside the cutoff [mean allele ratio, 2.15 (53% imbalance) versus 1.52 (34% imbalance), P = 0.03].
Ten cases contained no abnormalities; four cases contained a single duct/TDLUs with LOH; in three cases, separate ducts/TDLUs contained distinct sites of LOH. In two cases, two normal-appearing samples had LOH of the same marker and allele (Table 3)
. These were considered independent, but could have represented a single, convoluted duct. There was a trend toward examination of more ducts/TDLUs in cases with LOH than cases without LOH (7.5 versus 4.5, P = 0.10), suggesting that detection of abnormalities may be related to the number of ducts/TDLUs examined. Detection of LOH in normal-appearing epithelium was not influenced by the subjects age at diagnosis (45 years in women with LOH versus 46 years in women without LOH). All 14 samples contained a single abnormality.
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Cancers
All cancers contained genetic abnormalities, usually multiple (Table 2)
. Overall, 29 of 32 (91%) CIS samples from 14 of 14 (100%) evaluable cases contained 124 LOH; and 19 of 20 (95%) Inv samples from 9 of 10 (90%) cases contained 98 LOH. The pattern of LOH among all CIS or all Inv samples within a case was usually identical, implying that they derived from a single clone (data not shown). When they differed, it was most commonly because of the presence of a normal pattern, suggesting contamination with normal cells.
Stroma and Lymph Node
No LOH was seen in nine samples from three patients with stroma examined. In one of four (25%) cases (case 0072), one of six pathologically uninvolved lymph nodes demonstrated one LOH. This may represent the baseline rate of mutation in lymphoid tissue, although an occult metastasis cannot be ruled out because the cancer contained the same abnormality.
LOH in Relation to Distance between Ducts/TDLUs and Cancer
We asked whether LOH in ducts/TDLUs was related to a samples distance from the cancer. Twenty-eight of 109 (26%) ducts/TDLUs examined were located on the same block as cancers. Four of these 28 (14%) (all from case 2034), had LOH, but none of these 4 LOH were present in adjacent cancers. LOH was also seen in 10 of 81 (12%) ducts/TDLUs located on blocks not containing cancer. As described above, in only one case was a precursor-product relationship possible. Thus, although duct structure is convoluted, it seems that ducts/TDLUs more distant from the cancer were equally likely to contain abnormalities as samples nearer to the cancer. In fact, normal-appearing ducts/TDLUs adjacent to cancers did not contain abnormalities present in the malignancy.
Extent of LOH: Single Versus Multiple Loci
As shown in Table 2
, LOH in normal-appearing ducts/TDLUs encompassed only single markers, ie, additional informative loci on the same chromosome arm showed no LOH. In contrast, LOH in cancers usually encompassed all informative markers on a chromosome arm. Overall, LOH at all informative loci on one or more arms was seen in 0 of 18 (0%) histologically normal specimens, 10 of 14 (71%) CIS, and 9 of 9 (100%) Inv cancers.
Chromosome Arms Demonstrating LOH
LOH in normal-appearing tissue could indicate chromosome regions harboring tumor suppressor genes important early in breast carcinogenesis.13
To identify these regions, we determined the proportional LOH on each chromosome arm for normal and malignant epithelial samples. The mean proportional LOH (or FAL) was 0.01 for normal epithelium, 0.27 for in situ cancer, and 0.30 for invasive cancers; the values for cancers are consistent with previous reports.14,15
Results are shown in Table 4
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LOH in Co-Existing Normal-Appearing and Malignant Epithelium
We evaluated whether identical abnormalities were present in morphologically normal ducts/TDLUs and co-existing cancers. If so, then the normal-appearing sample could represent a clonal precursor of the cancer. In contrast, LOH in normal but not malignant tissue suggests the presence of two independent clones. We found only 1 of 14 (7%), ducts/TDLUs with LOH, from 1 of 8 (13%) cases, that had the same LOH as the co-existing cancer (Table 2)
. Representative examples are presented in Figure 3
and Table 3
summarizes the results. In the single case (case 0053) with LOH of the same site and allele in a normal-appearing ducts/TDLUs and the cancer, it is possible that the 7q LOH was coincidental, because this LOH was not seen in proliferative lesions that shared other LOH with the cancer (data not shown). We did find LOH of a markers opposite alleles in ducts/TDLUs compared with co-existing cancers (Figure 3B)
. Thus, the great majority of ducts/TDLUs with LOH (13 of 14, or 93%) were clonally distinct from co-existing cancers.
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| Discussion |
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These results raise two primary points for consideration. First, what roles do ducts/TDLUs with LOH play? The ability to detect LOH indicates that a substantial proportion of the samples cells contain the identical genetic abnormality, ie, represent the progeny of a single cell. LOH at various sites might occur in individual cells, but it will be detected only if the cell subsequently undergoes clonal expansion. Clonal expansion can result from a growth advantage conferred on the cell by loss of a critical gene. (Although the function of the putative critical genes remaining allele is unknown, haploinsufficiency alone is capable of generating a phenotype.) Alternatively, clonal expansion could reflect normal mammary development because a genetic change occurring in the breast before puberty would probably be manifest as a detectable mutation in normal adult breast tissue. We favor the former explanation because LOH was found in scattered, single ducts/TDLUs, whereas the mammary glands stem-cell-derived monoclonal patches probably encompass larger areas and contain multiple TDLUs.16-18
Also suggestive that at least some ducts/TDLUs with LOH result from loss of a critical gene, and may be meaningful clones, is that the sites of LOH were not entirely random. We noted LOH at 1q and 16q, and perhaps 17q, relatively frequently in both normal and malignant tissue, whereas LOH at 11q and 17p were noted only in malignancies. These results suggest that LOH at certain sites may be associated with clonal expansion, whereas LOH at other sites may be associated with later steps in tumor development. Based on a small number of LOH events, these results warrant further examination in a larger study. However, they are consistent with data suggesting that genes important early in breast tumorigenesis may be located on 1q and 16q,14,19 whereas genes acting later may be on 17p (for instance, p5320-22 ) or 11q.22,23 We did not examine abnormalities of specific genes, but microsatellites were selected to be in the vicinity of several genes implicated in breast carcinogenesis, ie, p53 (on 17p13) CCND1 (cyclin D1 on 11q13), or ATM (on 11q23).
Thus, although the majority of normal-appearing clones may not be destined to evolve into invasive disease, we speculate that ducts/TDLUs with LOH, particularly at 1q or 16q, might constitute a reservoir from which more advanced lesions develop. This would be consistent with a previous report noting the same LOH in a cancer and adjacent TDLUs.4 In the present study, ducts/TDLUs with the same LOH as the co-existing cancer may have been missed because of sampling (we did not enrich for ducts/TDLUs located near cancers), or because of obliteration of the original aberrant ducts/TDLUs by tumor growth. Their absence does not alter the conclusion that most ducts/TDLUs with LOH seem unrelated to co-existing cancers. Progression of more than one unrelated clone might contribute to the development of proliferative lesions, second malignancies or, uncommonly, synchronous independent tumors. Because it remains possible that an occult mutation is common to seemingly unrelated clones, progression of more than one clone could conceivably reflect clonal evolution and contribute to intratumoral heterogeneity.24,25
An unanswered question that should help determine the roles played by ducts/TDLUs with LOH is whether the number of samples with LOH, or the fraction of cases with LOH in histologically normal epithelium, is increased in these cancer-containing breasts compared to presumed, but undefined, normal background rates. Additional studies will address this question more conclusively, but preliminary evidence has suggested that abnormalities increase in histologically normal epithelium as breast cancer risk increases.5 This view would be consistent with breast cancer patients increased risk of cancer in the contralateral breast.26,27 Because detection of LOH in the present study may have been related to the number of ducts/TDLUs examined (P = 0.10), if more samples were examined, an even larger proportion of cases might contain abnormalities. Similarly, because the location of ducts/TDLUs with LOH seemed unrelated to their distance from the cancer, if more samples were examined, more aberrant ducts/TDLUs might be found in each breast.
The second point for consideration is whether these results provide support for particular mechanisms implicated in human breast carcinogenesis. A majority [13 of 14 (93%)] of normal-appearing epithelial clones detected in the present study were distinct from, and thus were not precursors of, the co-existing cancer. The presence of multiple, distinct co-existing clones (ie, the cancer plus any ducts/TDLUs with LOH) is consistent with the hypothesis that some form of genetic instability, manifest in this study as LOH, may begin very early in breast tumorigenesis, while tissue is histologically normal. The geographic extent of any such area of instability is uncertain. Field abnormalities have been proposed previously in cancer-containing breasts.28-30
The present results also suggest that the predominant mechanism(s) leading to LOH may change during tumor progression. LOH of limited chromosome regions, as we found in ducts/TDLUs, is consistent with mitotic recombination (although other mechanisms are plausible)31-33 and might occur first. In contrast, LOH at all evaluable markers along an arm, as we found in cancers, would more likely result from loss of an entire chromosome (chromosome nondisjunction).33 Chromosome number instabilities are characteristic of human cancers34 and may be because of malfunction of the mitotic chromosome segregation apparatus.35 Thus, mechanisms leading to LOH in limited chromosomal regions may contribute early to breast tumorigenesis, whereas mechanisms leading to whole chromosome abnormalities may contribute to late events. Consistent with this, a recent study posits aneuploidy as a late event in breast carcinogenesis,36 and only rare cytogenetic abnormalities have been reported in normal-appearing tissue adjacent to cancers.19,37
In summary, the current data indicate that clonal, genetically abnormal ducts/TDLUs are scattered throughout normal-appearing epithelium of cancerous breasts. These clones are distinct from the co-existing cancer, and could be a consequence either of normal development or of pathological events. It is possible that ducts/TDLUs with LOH form a reservoir from which cancers may develop if sufficient additional abnormalities accumulate. The presence of multiple clones (ie, the cancer plus any ducts/TDLUs with LOH) suggests that some type of genetic instability, affecting an undefined area of breast tissue, may contribute early to tumorigenesis.
| Footnotes |
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Supported by the Department of Defense Breast Cancer Research Program (grant DAMD 17-97-7191), the Massachusetts Department of Public Health Breast Cancer Research Program, and the National Institutes of Health (grant CA81078).
Accepted for publication March 29, 2002.
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