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From the Institute of Molecular Radiobiology,*GSF-Forschungszentrum für Umwelt und Gesundheit GmbH, Neuherberg, Germany; the Institute of Pathology,
Universtätsklinikum Freiburg, Freiburg, Germany; the Department of Gastroenterology and Hepatology,
Endoscopy Unit, Karolinska Hospital, Stockholm, Sweden; the Department of Pathology and Cytology,¶ Medilab and Karolinska Institute, Stockholm, Sweden; the Department II of Internal Medicine,|| Osaka Medical College and Hospital, Takatsuki City, Osaka, Japan; the Department of Internal Medicine,** Fujita Health University, Toyota, Aichi, Japan; and the Department of Gastroenterology and Hepatology,
Karolinska Hospital, and Karolinska Institute, Stockholm, Sweden
| Abstract |
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During the past few years, colorectal tumorigenesis has been associated with the progressive acquisition of a variety of genomic alterations by neoplastic cells, some of these have been linked to early stages of evolution. Two groups have been distinguished according to their genetic alterations.8 The major group, called LOH+ (loss of heterozygosity) or microsatellite stability (MSS), is characterized by frequent allelic losses associated with mutations that inactivate tumor suppressor genes (APC, p53) and account for at least two-thirds of tumors; the second group of tumors exhibit a high frequency of replication error at microsatellite loci, thus termed RER+ (replication error) or microsatellite instability (MSI), and were shown to be impaired in the DNA mismatch repair pathway. Furthermore, genes of the ras family have been found activated by missense mutations in 45% of colorectal neoplasias.
It has been reported that there may be a different clinical behavior and histopathological character between nonpolypoid and polypoid adenomas,2-7 suggesting an alternative pathway in the genesis of colorectal cancer.9,10 However, the clinical and molecular genetic dignity of nonpolypoid neoplastic lesions still remain rather unclear.
The molecular genetic characteristics of nonpolypoid colorectal adenomas has been described in relatively few publications. K-RAS mutations were significantly associated with the polypoid phenotype of the adenomas. Further, loss of heterozygosity at chromosomes 3p, 2p, 5q, 17p, and 18q have been reported11 and the frequency of somatic mutations of the APC and p53 genes in nonpolypoid colorectal adenomas12 has been described. Other studies have focused on the replication error status and transforming growth factor-ßRII mutations paying attention also to mutations of APC and K-RAS.13 A recent publication reports on the aberrant expression of G1 phase cell-cycle regulators in nonpolypoid and polypoid colorectal adenomas.14 To date these sparse molecular genetic investigations, with the exception of low K-RAS mutation rate in nonpolypoid adenomas, indicate that nonpolypoid adenomas seem to follow the tumorigenesis pathways very similar to those identified in polypoid adenomas and carcinomas.
All of the molecular genetic results mentioned above are based mainly on the analysis of individual genes that are known to be involved in the colorectal tumorigenesis pathway and they do not satisfactorily explain the differences that seem to exist between colorectal adenomas with polypoid and nonpolypoid phenotype.
The aim of this study is to investigate the entire genome of nonpolypoid adenomas for chromosomal imbalances by means of comparative genomic hybridization (CGH) profiling and to examine whether there is a specific genotype for nonpolypoid adenomas, which could explain the different clinical behavior and histopathological character between both phenotypes of colorectal adenomas. In this study we investigated 22 nonpolypoid adenomas, 9 carcinomas ex-nonpolypoid adenomas, and 28 polypoid adenomas by CGH and compared resulting chromosomal gains and losses to obtain any clues for differences in the tumorigenic pathway.
| Materials and Methods |
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The tissue samples selected for CGH analysis in this study have been either removed at colonoscopy (polypoid and nonpolypoid adenomas, carcinomas ex-nonpolypoid adenomas) or by surgical resection (carcinomas ex-polypoid carcinomas). A total of 22 nonpolypoid adenomas and 9 carcinomas ex-nonpolypoid adenomas from 27 patients (5 females, 22 males) were investigated in the present study. Additionally, 28 polypoid adenomas from 27 patients (13 female, 14 male) as well as 14 polypoid carcinomas from 14 patients were studied for comparison. Nine normal mucosa samples were examined for control. Histopathological data of the patients are summarized in Tables 1 and 2
. For nonpolypoid neoplasias tumor size ranges from 3 to 35 mm (mean, 11.3 mm), tumors were located for 14 cases in the right colon and for 17 cases in the left colon and patients had an age range of 30 to 91 years (mean, 69 years). For polypoid neoplasias the tumor size was determined between 5 and 40 mm (mean, 10.6 mm), 5 tumors showed a location in the right and 23 tumors in the left colon and patients (14 males, 13 females) had an age range of 56 to 84 years (mean, 69 years).
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Formalin-fixed and paraffin-embedded tissue specimens have been cut and stained with hematoxylin and eosin (H&E) according to standard procedures for routine histopathological examination. For CGH analyses representative areas of the neoplasms were microdissected from tissue sections.
The histopathological classification of each sample was re-evaluated independently by two pathologists. Predominantly tubulary adenomas were present (n = 19 for nonpolypoid and n = 17 for polypoid adenomas). Only a minority of cases showed serrated (n = 2 for nonpolypoid and polypoid adenomas each), tubulovillous (n = 9 for polypoid adenomas), or villous (n = 1 for nonpolypoid adenomas) subtypes.
Endoscopic Criteria Used in this Study
Nonpolypoid (ie, nonprotruding) adenomas were defined as lesions lacking an exophytic, polypoid configuration at colonoscopy, usually consisting of slightly elevated dysplastic mucosal plaques never more than two times the thickness of the adjacent nondysplastic segments at histopathological examination. Polypoid (ie, exophytic) adenomas were defined as protruding lesions either with (pedunculated) or without (sessile) stalks.
Morphological Criteria Used in this Study
Histopathological classification was performed according to World Health Organization.15 In particular, criteria for defining nonpolypoid (flat) adenomas include the presence of slightly elevated lesions with flat or depressed surface lacking an exophytic polypoid configuration. Those lesions that were classified as carcinomas ex-nonpolypoid (flat) adenomas demonstrated in addition to the above described criteria the presence of invasion, containing invasive carcinoma. Lesions that were classified as carcinomas ex-polypoid adenomas are exophytic cancers with presence of residual (polypoid) adenoma.
DNA Extraction and Hybridization
The analyses were performed on archival material from formalin-fixed tissues embedded in paraffin. Serial sections were cut for tissue microdissection (5 µm). The first and the last section were stained with H&E. Microdissection was performed on hematoxylin-stained sections under an inverted microscope yielding at least 80 to 90% pure neoplastic cells for DNA extraction. At least four to six serial sections were sampled, depending on the size of area. The cells were transferred into a sterile microcentrifuge tube and the DNA was extracted with NucleoSpin Tissue Kit (Clontech Laboratories, Inc., Palo Alto, CA) as specified by the manufacturer.
Amplification and Labeling of DNA
For amplification, MseI restriction endonuclease digest followed by ligation-mediated polymerase chain reaction (PCR) were performed on DNA extracts according to Klein and colleagues.16 Briefly, the MseI-digested DNA was ligated by annealing of the primers MseLig 21 and MseLig 12. At 15°C the T4-DNA-ligase (Roche Diagnostics, Mannheim, Germany) was added and primers and DNA fragments were ligated overnight. After primary PCR amplification the size of DNA fragments was checked by agarose gel electrophoresis and should range between 500 and 1500 bp.
The amplified DNA was indirectly labeled by PCR using biotin-16-dUTP (Roche Diagnostics) for the tumor DNA and digoxigenin-11-dUTP (Roche Diagnostics) for the female or male reference DNA. The amplification products were then MseI digested for 3 hours at 37°C. After purification the DNAs were used for subsequent CGH analysis.
CGH and Image Analysis
For each CGH hybridization 1 µg of tumor DNA and 800 ng of normal female or male DNA, plus 25 µg of CotI DNA (Invitrogen, Karlsruhe, Germany) and 20 µg of herring sperm DNA (Sigma-Aldrich, Taufleivchen, Germany) were co-hybridized to denatured metaphases for 72 hours at 37°C. After hybridization, biotin-labeled tumor DNA was detected with avidin-FITC DCS (Vector Laboratories, Wertheim-Bettingen, Germany), the digoxigenin-labeled control DNA with anti-digoxigenin-rhodamine (Roche Diagnostics). Slides were counterstained with 4,6-diamidino-2-phenylindole in anti-fade solution and mounted in Vectashield (Vector Laboratories, Burlingame, CA). For CGH analysis, at least 10 metaphases were captured and karyotyped after visualization with a Zeiss Axioplan 2 fluorescence microscope (Zeiss, Oberkochen, Germany) equipped with filter sets (single-band excitation filters for 4'-6-diamidino-2-phenylindole, Cy2, and Texas Red). Averaged profiles were generated by CGH analysis software (ISIS 3, V2.84; MetaSystems, Altlussheim, Germany) from at least 10 to 15 homologous chromosomes and interpreted according to published criteria17,18 using statistical confidence limits based on t-statistics. A chromosomal gain was classified as high-level amplification when the CGH ratio exceeded a value of 1.5, or if the Cy2 fluorescence showed a strong, distinct signal by visual inspection and the corresponding ratio profile was diagnostic of overrepresentation. Telomeric regions, heterochromatic regions, and the Y chromosome were all excluded from analyses, because of interindividual variations within these regions.
Ligation-mediated PCR-amplified DNA obtained from morphologically normal mucosa DNA was co-hybridized with male or female reference DNA to metaphase preparations. In these experiments no chromosomal changes were detected except for chromosome region 1p34-36 and chromosome 19. These regions are known to show artifactual results by CGH.19-21
Statistical Analysis
The study cohort consists of patients from a hospital-based case control study. For control cases (polypoid adenomas, normal mucosa) patients have been selected randomly from the patient cohort. For comparison of average aberration frequencies in each entity, Fishers exact test, binomial test, and pairwise comparison analysis were applied.
| Results |
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No chromosomal aberrations were detected in this series of normal mucosa. The DNAs from normal specimens were amplified by PCR and labeled as test DNAs. The ratios for the sex chromosomes were consistent with the gender of the patients in all cases.
Nonpolypoid Adenomas
Recurrent chromosomal aberrations (at least two alterations) were observed as DNA copy number losses on chromosomes 16, 17p, 18, 20, and 22 as well as gains of chromosomal regions on chromosomes 2q, 4q, 5q, 6, 8q, 12q, and 13q (Figure 1)
. These chromosomal imbalances were detected in 11 low-grade adenomas (11 of 19) as well as in 3 high-grade adenomas (3 of 3).
Polypoid Adenomas
Eighteen low-grade adenomas and 10 high-grade adenomas were investigated. Recurrent DNA losses were detected on chromosomes 16, 18, and 22 and gains were identified on chromosomes 7q and 13 (Figure 1)
. Chromosomal changes were preferentially detected in high-grade adenomas, whereas low-grade adenomas showed in single cases only copy number changes for whole chromosomes indicating aneuploidy.
Carcinomas Ex-Nonpolypoid Adenomas (n = 9)
DNA losses were frequently detected on chromosomes 8p, 12q, 14, 15q, 16, 17p, 18, and 22 as well as DNA gains on chromosomes 3q, 5, 6, 7, 8q, 12q, and 13. Very complex aberrations were detected in some cases. A summary of aberration frequencies is shown in Table 2
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Carcinomas Ex-Polypoid Adenomas (n = 14)
Frequent DNA losses were detected on chromosomes 10q, 12q, 14q, 15q, 16p, 17q, 18, and 22 as well as DNA gain on chromosome 20. Also typical deletions on chromosomes 5q and 8p became apparent in two cases each. Some cases showed very complex aberrations similar than in carcinomas ex-nonpolypoid adenomas. Aberration frequencies are also demonstrated in Table 2
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Comparison of Chromosomal Changes between Nonpolypoid Adenomas and Polypoid Adenomas
A comparison of frequent chromosomal alterations (≥2 alterations) between nonpolypoid and polypoid adenomas and carcinomas is summarized in Table 3
. Statistical analysis revealed that cases with more than two aberrations are significantly more frequent for nonpolypoid adenomas (Fishers exact test, P = 0.035). In contrast to polypoid adenomas, nonpolypoid adenomas exhibit frequent chromosomal aberrations already in low-grade lesions. A pairwise comparison test of single chromosomal aberrations revealed a significant higher frequency of 16p deletions in nonpolypoid adenomas compared to polypoid adenomas (Fishers exact test, P = 0.0026). This aberration type is significantly more frequent than any other chromosomal aberration in nonpolypoid adenomas (P < 0.001, binominal test). There is an accumulation of chromosomal imbalances in the adenoma-carcinoma sequence for both entities. As demonstrated in Table 3
the aberration pattern for DNA losses is very similar between carcinomas ex-nonpolypoid adenomas and carcinomas ex-polypoid adenomas, however, differences exist for DNA gains.
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| Discussion |
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This is the first comprehensive CGH study to detect chromosomal imbalances between nonpolypoid and polypoid adenomas of the colon. Our results show that recurrent chromosomal aberrations in nonpolypoid adenomas of the colon are found as DNA copy number losses on chromosomes 16, 17p, 18q, 20, and 22. Gains of chromosomal regions were observed on chromosomes 2q, 4q, 5q, 6, 8q, 12q, and 13q (Table 3)
. Carcinomas ex-nonpolypoid adenomas that represent intramucosal carcinomas are characterized by complex aberration patterns showing frequently chromosomal losses on 8p, 12q, 14, 15q, 16, 17p, 18, and 22, gains on 3q, 5, 6, 7, 8q, 12q, and 13 (Table 3)
. Although more amplifications were detected in carcinomas ex-nonpolypoid adenomas than in carcinomas ex-polypoid adenomas; many of the deletions detected occurred in both tumor types (eg, deletions on 17p and 18q).
So far, there are no cytogenetic data on nonpolypoid adenomas of the colon. For comparison, polypoid adenomas were additionally investigated in this study. Our subset of polypoid adenomas exhibited frequent losses of whole chromosomes 16, 18, and 22 as well as gains of chromosomes 7q and 13, however, a lower frequency of chromosomal aberrations was detected compared to nonpolypoid adenomas. Moreover, loss of whole chromosomes is the most frequent finding indicating that aneuploidy is a very early event in polypoid adenomas, which is in agreement with an earlier study of Ried and colleagues22 reporting on crude aneuploidy in low- and high-grade polypoid adenomas.
The most frequent affected chromosomal regions in nonpolypoid and polypoid adenomas from this study are summarized in Table 3
and Figure 1
. Nonpolypoid adenomas show chromosomal changes very early in low-grade dysplasias, which is different to the observation in polypoid adenomas, although an accumulation of chromosomal imbalances became apparent in the adenoma-carcinoma sequence comparable to the situation in polypoid adenomas. Moreover, cases with more than two aberrations are significantly more frequent in nonpolypoid than in polypoid adenomas (P = 0.035, Fishers exact test). This represents another indication for a different carcinogenic pathway in both lesions. More striking evidence for this hypothesis comes from a detailed analysis of single aberrations. It is obvious from Figure 1
that gains on chromosomes 2q, 5q, 6, 8q, and 12q occurred exclusively in nonpolypoid adenomas. In addition loss on chromosome 17p became apparent in very early lesions (low-grade dysplasia) of nonpolypoid adenomas, which cannot be confirmed for polypoid adenomas. It is of special interest that 16p deletions are significantly more frequent than any other aberration in nonpolypoid adenomas (8 of 36 aberrations, P < 0.001, binominal test) and that pairwise comparison using Fishers exact test reveals also a significant difference for this aberration between nonpolypoid and polypoid adenomas (P = 0.0026).
The successive molecular changes proposed to occur at different stages in the adenoma-carcinoma sequence were primarily based on DNA studies of polypoid adenomas. An accumulation of genetic changes in tumor suppressor genes and oncogenes such as adenomatous polyposis coli (APC), K-RAS, and TP53 has been reported in this type of colorectal carcinogenesis.23,24
For nonpolypoid adenomas and carcinomas ex-nonpolypoid adenomas such genetic changes are widely unknown for the adenoma-carcinoma sequence. The low incidence of KRAS mutations reported for nonpolypoid colorectal adenomas10,11,13
suggested a different genetic basis for the transformation process in these lesions. Also RAS mutations, a frequent genetic change in early colorectal tumor development of polypoid origin8,25
have been reported to be not involved in the carcinogenesis of ex-nonpolypoid adenoma.26
Similar conclusions about different avenues for colorectal cancer formation have been drawn from recent loss of heterozygosity studies reporting about differences in the KRAS locus and on microsatellite loci on chromosome 3p between polypoid and nonpolypoid lesions.27
It became also apparent from a very recent study of Hermsen and colleagues28
demonstrating the presence of varying combinations of few chromosomal abnormalities during adenoma-to-carcinoma progression, which indicate also the existence of multiple chromosomal instability pathways. As indicated in the same study28
gains on chromosomes 8q23 and 13q21-22 and losses on chromosomes 8p21, 17p12-13, and 18q12-21 are associated with tumor progression present in advanced lesions (adenomas containing carcinoma foci or developed carcinomas). Interestingly, most of these alterations could be detected in our tissue samples preferentially in nonpolypoid adenomas showing low-grade dysplasia and in nonpolypoid intramucosal carcinomas (Table 3)
. No single polypoid adenoma with low-grade dysplasia in our subset of cases has shown chromosomal alterations in the critical loci indicated by Hermsen and colleagues.28
In our cohort of low-grade dysplasias only nonpolypoid adenomas revealed chromosomal imbalances as mentioned above. Therefore, this phenomenon may reflect a higher malignant potential of nonpolypoid adenomas, which also show a higher extent of genetic instability than polypoid adenomas. Assuming a higher malignant potential for nonpolypoid adenomas one may also speculate that a genetic link between the specific growing pattern of nonpolypoid neoplasms and the malignant potential may exist.
A puzzling finding in colorectal neoplasms is the overexpression of pRB and amplification of the RB1 gene,14 which is paradoxical to the common inactivation of the RB gene in most types of human cancers.29,30 The finding of frequent 13q gain for nonpolypoid and polypoid adenomas in this study accounts for this puzzling situation and may contribute to support one of several hypotheses from elevated pRB being a secondary neutral change resulting from chromosome 13 gains, to a potential oncogenic role of pRB.14,31,32
The present study summarizes chromosomal changes detectable in nonpolypoid adenomas of the colon. It has been demonstrated that distinct differences to polypoid adenomas exist. This observation supports the assumption from earlier genetic and microsatellite studies10,11,26 that different genetic pathways for tumor progression may exist for colorectal neoplasias of polypoid and nonpolypoid phenotype. Moreover, this study provides a basis for search of new gene alterations in nonpolypoid adenomas starting at frequent chromosomal imbalances.
| Footnotes |
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Supported by grants from the King Gustav V Jubilee Foundation in Stockholm and the Research Grants of the Karolinska Institute, Stockholm.
Accepted for publication April 10, 2003.
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