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From the First Department of Medicine* and the Department of Biochemistry 1,
Hamamatsu University School of Medicine, Hamamatsu, Shizuoka, Japan
| Abstract |
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Protein ubiquitination and subsequent proteasomal degradation is a common regulatory mechanism.15 Several studies have demonstrated that Smads undergo ubiquitin-proteasome-mediated degradation.16-19 Protein ubiquitination is carried out by a sequence of three enzymes, the E1 ubiquitin-activating enzymes, the E2 ubiquitin-conjugating enzymes, and the E3 ubiquitin ligases. Recently, a novel class of E3-type HECT-domain ubiquitin ligases, designated Smurfs (Smad-ubiquitination regulatory factors), has been shown to interact with Smads and is implicated in their ubiquitination. Smurf1 regulates the amount of Smad1 in the cytoplasm of unstimulated cells.20 Smurf2 targets Smad1, Smad2,17,18 and the transcriptional co-repressor SnoN,21 but not Smad3,18 for ubiquitination and degradation. Smurf2 has also been found to bind to Smad7 and induce ubiquitin-dependent degradation of the active TGF-ß receptor complex and Smad7.22 Smad3 ubiquitination, mediated by the SCF/Roc1 E3 ligase complex, has also been reported.19
The renal TGF-ß system has been widely studied, and several recent reports demonstrated the involvement of a Smad-mediated TGF-ß signaling pathway in the progression of kidney disease23-26 ; however, the regulation of TGF-ß-Smad signaling has not yet been elucidated in kidney disease. In the present study, we investigated the glomerular expression of Smads 2, 3, and 4 in anti-thymocyte serum (ATS) nephritis, in which the glomeruli show a transient increase in TGF-ß1 expression. We also examined the ubiquitination and degradation of Smad2, as well as the glomerular expression of Smurf2, because significant decreases in Smad2 protein were noted in ATS nephritic glomeruli.
| Materials and Methods |
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All studies were conducted in accordance with the guidelines for the care and use of laboratory animals of Hamamatsu University School of Medicine. ATS was raised in Suffolk sheep by subcutaneous immunization with Wistar-rat thymocytes conjugated with complete Freunds adjuvant. Sera were heat-inactivated (56°C for 30 minutes) and adsorbed three times with Wistar-rat erythrocytes. Male Wistar rats, weighing 150 g, were injected intravenously with 0.5 ml ATS.
Rats were maintained in metabolic cages, and 24 hours of urine output was collected on days 0, 3, 7, 14, and 28. Urinary protein was measured with a pyrogallol red-molybdate protein assay kit (Wako, Osaka, Japan). Rats were killed on days 0, 3, 4, 5, 6, 7, 14, and 28, and the kidneys were immediately perfused in situ with ice-cold 0.1 mol/L phosphate-buffered saline (PBS) (pH 7.4), and removed. Parts of the renal cortices were fixed with 4% paraformaldehyde in PBS for 4 hours, rinsed with PBS, dehydrated in graded ethanol, and embedded in paraffin. Kidney sections (3-µm-thick) were stained with periodic acid-Schiff stain and analyzed under a light microscope. Glomeruli were isolated from the remaining cortices using a graded sieving technique27 under sterile conditions, and were saved for glomerular culture, protein extraction, and total RNA extraction.
Measurement of TGF-ß1 in Cultured Glomeruli
Isolated glomeruli, 10,000/well, were cultured in 1 ml RPMI medium containing penicillin and streptomycin. After 24 hours incubation, the medium was collected, centrifuged for 10 minutes at 9000 x g, and the resulting supernatants were used for the measurement of TGF-ß1 with the TGF-ß1 Emax Immunoassay System (Promega, Madison, WI) according to the manufacturers instructions.
Western Blot Analysis
Isolated glomeruli (approximately 20,000) were homogenized in 300 µl RIPA buffer (25 mmol/L Tris-HCl [pH 7.4], 150 mmol/L NaCl, 0.1% sodium dodecyl sulfate [SDS], 0.5% Triton X-100, 0.5% sodium deoxycholate) containing protease inhibitors (150 µg/ml phenylmethylsulfonyl fluoride [PMSF], 5 µg/ml aprotinin, 5 µg/ml pepstatin, 5 µg/ml leupeptin) at 4°C. After incubation for 12 hours, the lysates were centrifuged at 4°C for 10 minutes at 9000 x g The protein concentrations of the lysates were measured with a pyrogallol red-molybdate protein assay kit (Wako). Soluble lysates were boiled for 7 minutes with 2X SDS sample buffer (100 mmol/L Tris-HCl [pH 6.8], 4% SDS, 0.2% bromophenol blue, 20% glycerol). Soluble lysates were loaded and separated by SDS-polyacrylamide gel electrophoresis (SDS-PAGE) using 4.2% acrylamide for the stacking gel and 8% acrylamide for the resolving gel. Protein was transferred to polyvinylidene difluoride membranes and probed with antibodies against human Smad2 (rabbit polyclonal antibody; Zymed Laboratories Inc., San Francisco, CA), human phospho-Smad2 (rabbit polyclonal antibody; Upstate Biotechnology, Waltham, MA), human Smad3 (rabbit polyclonal antibody; Santa Cruz Biotechnology, Santa Cruz, CA), human Smad4 (mouse monoclonal antibody; Santa Cruz Biotechnology), human Smurf2 (goat polyclonal antibody; Santa Cruz Biotechnology), and ß-actin (mouse monoclonal antibody; Sigma Chemical Co., St. Louis, MO). The primary antibodies that bound to the target proteins were detected using horseradish peroxidase-conjugated anti-rabbit IgG, anti-mouse IgG (Promega), or anti-goat IgG antibodies (Cortex Biochem, San Leandro, CA), as appropriate. The antibodies were visualized with Western Lightning (PerkinElmer Life Sciences Inc., Boston, MA). Glomerular extracts were obtained from three rats per group per time point of observation, and were mixed together and analyzed by Western blotting. To confirm that the bands detected by the anti-human Smurf2 antibody in the rat glomerular samples were Smurf2 protein, excess Smurf2 blocking peptide (Santa Cruz Biotechnology) was pre-incubated with the antibody before probing. Human Smurf2 protein was extracted from HEK293 cells that were transfected with the plasmid vector pcDNA3 containing flag-tagged full-length human Smurf2 cDNA (kindly provided by Dr. Kohei Miyazono of the University of Tokyo with the permission of Dr. Xin-Hua Feng of Baylor College of Medicine) using FuGENE 6 Transfection Reagent (Roche Molecular Biochemicals, Indianapolis, IN) and used as a positive control.
mRNA Analysis
Total RNA was extracted from isolated glomeruli that had been stored in RNAlater (Ambion Inc., Austin, TX) at -20°C, by guanidinium isothiocyanate extraction and column purification using an RNeasy kit (Qiagen, Tokyo, Japan). Reverse transcription (RT) of the RNA was performed using a first-strand cDNA synthesis kit (Roche Molecular Biochemicals) and 1 µg total RNA. After the completion of cDNA synthesis, the enzyme was heat-inactivated for 5 minutes at 95°C. The polymerase chain reaction (PCR) with QuantiTect SYBR Green PCR Master Mix (Qiagen) was used to analyze Smad2 mRNA. All PCR primers were designed using the online software Primer 3 (http://www-genome.wi.mit.edu/cgi-bin/primer/primer3_www.cgi). Primers for rat Smad2 were 5'-CCAGGTCTCTTGATGGTCGT-3' and 5'-GGCGGCAGTTCTGTTAGAAT-3', giving an amplified RT-PCR product of 253 bp. Primers for 18S ribosomal RNA, used as an internal control, were 5'-CCCTTCCGTCAATTCCTTTA-3' and 5'-GGAGGTTCGAAGACGATCAG-3', giving an amplified product of 173 bp. Cycling conditions were: 15 minutes preincubation at 95°C, 15 seconds denaturation at 95°C, 20 seconds annealing at 60°C, and 10 seconds extension at 72°C, using a LightCycler (Roche Diagnostics, Minato-ku, Tokyo). The fluorescent product was detected at the end of each cycle. Product specificity was confirmed in initial experiments by agarose gel electrophoresis and routinely by melting-curve analysis. Real-time PCR data were analyzed according to the manufacturers instructions.
Preparation of Recombinant Smad2 and Smad3
Plasmid vector pGEX-4T-1 containing the glutathione-S-transferase (GST) gene and full-length human Smad2 or Smad3 cDNAs were kindly provided by Dr. Hidetoshi Hayashi of Nagoya City University. Recombinant GST-Smad2 and GST-Smad3 were expressed in Escherichia coli strain BL21 transformed with the recombinant plasmid. GST fusion proteins were purified according to the manufacturers instructions (Amersham Biosciences Inc., Piscataway, NJ).
Degradation Assays for Smad2
To investigate the degradation of glomerular Smad2, we used an in vitro degradation assay for endogenous Smad2 to evaluate the glomerular extracts collected on day 7 from rats with ATS nephritis, and those from control animals.
A portion of the isolated glomeruli was lysed in a buffer containing 50 mmol/L Tris-HCl (pH 7.5), 300 mmol/L NaCl, 0.5% Triton X-100, 150 µg/ml PMSF, 5 µg/ml aprotinin, 5 µg/ml pepstatin, and 5 µg/ml leupeptin. The lysates were homogenized by pipetting 50 times, incubated for 30 minutes at 4°C, and centrifuged for 10 minutes at 9000 x g. The resulting supernatants (glomerular extracts) were used in the degradation assay. Glomerular extracts, 5.5 µl in 7.5 µl ubiquitination mixture (50 mmol/L Tris-HCl [pH 8.3], 5 mmol/L MgCl2, 2 mmol/L dithiothreitol [DTT], 5 mmol/L adenosine-5'-triphosphate, and 2 mg/ml ubiquitin) were incubated for 0, 1, 2, 4, or 6 hours at 37°C. After incubation, each sample was boiled for 7 minutes with 2X SDS sample buffer and subjected to SDS-PAGE on an 8% gel, followed by immunoblot analysis with anti-Smad2 antibody. The degradation assay was also performed with 1X proteasome inhibitor mix (0.25 mmol/L MG132, 0.25 mmol/L MG115).
In Vitro Assays of Ubiquitination Activity Directed against Smad2
To determine whether glomerular levels of Smad2 are regulated by ubiquitin-dependent degradation, we performed an in vitro assay of ubiquitination activity directed against exogenous recombinant GST-Smad2 in the glomerular extracts from rats with ATS nephritis on days 3, 4, 5, 6, and 7, and in those from control animals (day 0).
Glomerular extracts were centrifuged for 8 hours at 100,000 x g, and the resulting supernatants (S100) were used in the ubiquitination assay, as described previously.29 In brief, 2 µl GST-Smad2 or Smad3 fusion protein solution was incubated with 5.5 µl glomerular extracts in 7.5 µl ubiquitination mixture (50 mmol/L Tris-HCl [pH 8.3], 5 mmol/L MgCl2, 2 mmol/L DTT, 10 mmol/L phosphocreatinine, 0.2 units/ml phosphocreatinine kinase, 5 mmol/L adenosine-5'-triphosphate, 50 µg/ml ubiquitin aldehyde, 1X protease inhibitor mix, 1X proteasome inhibitor mix, 2 mg/ml ubiquitin, 60 nmol/L E1 [BostonBiochem, Cambridge, MA], 870 nmol/L UbcH5b [BostonBiochem]). After incubation for 30 minutes at 30°C, the substrates were subjected to SDS-PAGE on a 6% gel, followed by immunoblot analysis with anti-Smad2 or anti-Smad3 antibody. Portions of the substrates were also immunoprecipitated with anti-Smad2 antibody and the resulting precipitates were subjected to SDS-PAGE on a 6% gel, followed by immunoblot analysis with anti-ubiquitin (Medical and Biological Laboratories Co. Ltd., Nagoya, Japan) or anti-Smad2 antibody.
Statistical Analysis
Data are presented as means ± SE. Groups were compared using unpaired Students t-test. P < 0.05 was considered significant.
| Results |
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Urinary protein excretion increased immediately after ATS injection, peaked on day 3, and then decreased gradually to the excretion levels seen in the control animals by day 28 (Figure 1)
. Increases in mesangial matrix accumulation and mesangial cell proliferation were noted in the glomeruli of rats injected with ATS, which peaked on day 7, ameliorated gradually thereafter (Figure 2)
, and returned to almost normal levels by 8 weeks. These findings are compatible with our previous report.28
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The levels of TGF-ß1 in the medium of cultured glomeruli increased after ATS injection, peaked on day 7, and declined thereafter (Figure 3)
. The peak value for glomerular TGF-ß1 in rats with ATS nephritis was approximately six times higher than that observed in control animals (day 0).
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We investigated the intracellular signaling molecules Smads 2, 3, and 4 in the glomeruli isolated from rats with ATS nephritis. Western blot analysis showed a marked decrease in the levels of Smad2 in glomeruli isolated from rats with ATS nephritis on days 3 to 7 relative to the levels in control glomeruli (day 0) (Figure 4A)
. In contrast to the decreased Smad2 in ATS nephritic glomeruli, no marked differences were noted in the levels of Smad3 or Smad4 between control glomeruli and ATS nephritic glomeruli.
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Degradation of Endogenous Smad2
To investigate whether the degradation of Smad2 was elevated in ATS nephritic glomeruli, we subjected glomerular extracts to an in vitro degradation assay. Degradation of endogenous Smad2 progressed in the glomerular extracts collected from rats with ATS nephritis on day 7 (Figure 5, A and B)
, when the glomerular levels of Smad2 protein were markedly decreased, as indicated in Figure 4A
. In contrast, no significant reduction in Smad2 was noted in the glomerular extracts collected from control animals (day 0). Degradation of endogenous Smad2 was prevented by the addition of proteasome inhibitors (Figure 5C)
. These data indicate that the proteasome-mediated degradation of Smad2 was enhanced in ATS nephritic glomeruli.
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Recently, the degradation of Smad2 through the ubiquitin-proteasome pathway has been demonstrated in cultured cells. To clarify whether the increased degradation of Smad2 in nephritic glomeruli involves the ubiquitin system, we investigated the in vitro ubiquitination activity directed against Smad2 in glomerular extracts using recombinant GST-Smad2 protein as the substrate. As shown in Figure 6A
, significant ladders of polyubiquitinated Smad2 were observed when recombinant GST-Smad2 proteins were incubated with glomerular extracts collected from rats with ATS nephritis. Densitometric analysis demonstrated that the increases in polyubiquitinated Smad2 after incubation with the glomerular extracts obtained from ATS nephritic rats at days 5 to 7 were 9- to 12-fold higher than the increases observed after incubation with glomerular extracts from control animals (day 0) (Figure 6B)
. In contrast, no significant ladders of polyubiquitinated GST-Smad3 protein were observed when recombinant GST-Smad3 protein was incubated for 30 minutes with the glomerular extracts obtained from control rats (day 0) or from ATS nephritic rats at day 7 (Figure 6C)
. Ladders of polyubiquitinated GST-Smad2 were also detected in the anti-Smad2-immunoprecipitated substrates of glomerular extracts from rats with ATS nephritis (Figure 6D)
.
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Smurf2 is a member of the HECT family of E3 ubiquitin ligases, and interacts with Smad2. We used Western blot analyses of Smad2, phospho-Smad2, and Smurf2 in the glomerular extracts of rats with ATS nephritis to investigate the relationship between the levels of Smad2 and Smurf2 in nephritic glomeruli. To confirm the specificity of the anti-Smurf2 antibody used in the present study, blocking peptide and positive control samples were used. Pretreatment of the anti-human-Smurf2 antibody with Smurf2 blocking peptides completely erased the Smurf2-specific band at 90 kd in the glomerular extracts collected from ATS nephritic rats on day 5 (Figure 7A)
, and from the protein extracts from HEK293 cells transfected with human Smurf2 cDNA which were used as positive control samples (not shown). Marked decreases in Smad2 and slight increases in phospho-Smad2 were noted on days 5, 6, and 7. In contrast, the glomerular levels of Smurf2 increased in almost inverse proportion to those of Smad2 (Figure 7B)
. Smurf2 protein was not detectable at day 0, became detectable at day 4, peaked at day 5, and began decreasing gradually thereafter.
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| Discussion |
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A marked decrease in Smad2 protein was noted in the glomeruli of rats with ATS nephritis, which reached a minimum between days 5 and 6. Because the levels of Smad2 mRNA in the nephritic glomeruli did not significantly differ from those in control glomeruli, it is unlikely that the decrease in Smad2 was due to the reduced expression of Smad2. Decreased translation of Smad2 may also contribute to the low Smad2 protein levels and this cannot be ruled out by the present study. Degradation of Smad proteins has recently been reported to be mediated by the ubiquitin-proteasome pathway.16-19 It is now also understood that protein ubiquitination is carried out by a sequence of E1 ubiquitin-activating enzymes, E2 ubiquitin-conjugating enzymes, and E3 ubiquitin ligases, and that the E3 ubiquitin ligases play a crucial role in defining the substrate specificity of and subsequent protein degradation by the 26S proteasomes. In the present study, we demonstrated for the first time that levels of Smurf2, an E3 ubiquitin ligase that targets Smad2,18 were increased, reached a maximum on day 5, and were inversely proportional to the decrease in Smad2 in the ATS nephritic glomeruli. Increases in Smad2 ubiquitination, as well as an increased degradation of Smad2, were also noted in the nephritic glomeruli. We further demonstrated that degradation of Smad2 in the glomerular extracts from ATS nephritic kidneys was inhibited by the addition of proteasome inhibitor. These data suggest that accelerated degradation of Smad2 by the Smurf2-mediated ubiquitin-proteasome pathway contributes to the decrease in Smad2 in the glomeruli of rats with ATS nephritis. Recently, we also found a similar decrease in Smad2 associated with increased expression of Smurf2 in the cortices of obstructed kidneys of mice with unilateral ureteral obstruction (manuscript in preparation), a model of progressive tubulointerstitial fibrosis in which the increased expression of TGF-ß1 plays a pathogenic role.31 We could not identify the cells that express Smurf2 because the antibodies we used were not suitable for the immunohistochemical detection of rat Smurf2.
Non-phosphorylated Smad2 is retained in the cytoplasm, and its retention is mediated by interactions with SARA (Smad anchor for receptor activation).32 Receptor-mediated phosphorylation of Smad2 increases its affinity for Smad4, and promotes its release from SARA and the accumulation of phosphorylated Smad2 in the nucleus.33 Although cytoplasmic ubiquitination and degradation of Smad120 and cytoplasmic ubiquitination of Smad3 which targets HEF1 for degradation34 have been reported, most studies indicated that the ubiquitination of Smad2 progresses in the nucleus by the action of Smurf2.16-18 Therefore, it is suggested that the decrease in Smad2 in ATS nephritic glomeruli resulted from the accelerated proteasomal degradation of Smad2, which was released from SARA, imported into the nucleus and ubiquitinated by Smurf2 on TßR-mediated phosphorylation.
The proteolytic degradation of intracellular proteins by the ubiquitin-proteasome pathway is essential for diverse processes, such as signal transduction, cell-cycle progression, and endocytosis.35 Recently, the TGF-ß-Smad signaling pathway-mediated proteolysis of p57kip2, a cyclin-dependent kinase inhibitory protein that acts as a negative regulator of the cell cycle and regulates cell differentiation, has been demonstrated in osteoblastic cells.36 In ATS nephritic glomeruli, the levels of Smad3, another R-Smad involved in TGF-ß signaling, and Co-Smad4 did not change significantly, which presents a striking contrast to Smad2. The decrease in Smad2 resulted from enhanced ubiquitination and proteasomal degradation may lead to a relative predominance of Smad3-mediated TGF-ß signaling, and to a repressionof that mediated by Smad2. In fact, increased expression of plasminogen-activator inhibitor-1 (PAI-1), a protease inhibitor that suppresses tissue plasminogen activator (tPA), a matrix-degrading enzyme, and sustains extracellular matrix deposition, has been shown in ATS nephritic glomeruli.37 And further, it has been reported that PAI-1 expression is regulated by TGF-ß signaling mediated by Smad3-Smad4 complexes.38 An increase in Smad3-mediated TGF-ß signaling, demonstrated by an increased nuclear accumulation of Smad3, was also reported in the glomerular and tubulointerstitial cells of the db/db mouse, a genetic model of type 2 diabetes, in which renal expression of TGF-ß and TßRII are augmented concomitantly.26
In the present study, we did not directly demonstrate whether phosphorylated Smad3 dominantly mediated the TGF-ß signals in ATS nephritic glomeruli. However, based on the dramatic decrease in total Smad2 in ATS nephritic glomeruli, we consider that it could influence, at least in part, the level of phosphorylated Smad2. Actually, only a slight increase in phosphorylated Smad2 was observed in ATS nephritic glomeruli, in which markedly enhanced TGF-ß activity has been demonstrated.4 Additionally, these data also suggest that not all TGF-ß signaling mediated by Smad2 was eliminated by the enhanced ubiquitin-dependent degradation of Smad2 in ATS nephritic glomeruli.
We have previously reported that the glomeruli isolated from rats with ATS nephritis were partially refractory to growth inhibition by TGF-ß1, and that the expression of TßRII is decreased in the proliferating mesangial cells of ATS nephritic glomeruli.28 In addition to the modulation of TßRII expression in proliferating mesangial cells, there is a relative predominance of Smad3, associated with the decrease in Smad2 that results from increased Smad2 ubiquitination and degradation. This may also contribute to the attenuated mitoinhibitory responses to TGF-ß1 in ATS nephritic glomeruli. Smad3 overexpression has been shown to stimulate cell proliferation and decrease differentiation in the preadipocyte cell line, 3T3-F442A.39 Reisdorf et al40 reported that the nuclear activity of Smad3 is a limiting factor in the myofibroblast response to TGF-ß1. Modulation of TGF-ß signaling via Smad2 and Smad3, which resulted in differential TGF-ß responsiveness during the activation of transdifferentiation from quiescent hepatic satellite cells to myofibroblasts, has been demonstrated in liver injury.41,42 Although it is quite conceivable that the targeted destruction of TGF-ß-activated Smad2 leads to the irreversible termination of Smad2-mediated intracellular TGF-ß signaling,16 the precise biological role of the decrease in Smad2 in ATS nephritic glomeruli remains unknown. It seems plausible that the expression of TGF-ß and TßR, as well as the Smads, may not simply reflect the expected pathological cell response to TGF-ß, if the post-receptor regulation of TGF-ß signaling, including the ubiquitination and degradation of Smad2 mediated by Smurf2, is modulated in the lesions. By considering their roles in the intracellular regulation of the TGF-ß-Smad signaling network in vivo, an understanding of the ubiquitination and proteasomal degradation of the Smads could shed new light on the mechanisms underlying the development of kidney disease.
| Acknowledgements |
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| Footnotes |
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Supported by a Grant-in-Aid for Scientific Research (number 12671035 to T. Y.) from the Ministry of Education, Science and Culture, Japan.
Accepted for publication July 8, 2003.
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