- Vermeulen L.
- De Sousa E.M.F.
- van der Heijden M.
- Cameron K.
- de Jong J.H.
- Borovski T.
- Tuynman J.B.
- Todaro M.
- Merz C.
- Rodermond H.
- Sprick M.R.
- Kemper K.
- Richel D.J.
- Stassi G.
- Medema J.P.
- Okawa T.
- Michaylira C.Z.
- Kalabis J.
- Stairs D.B.
- Nakagawa H.
- Andl C.D.
- Johnstone C.N.
- Klein-Szanto A.J.
- El-Deiry W.S.
- Cukierman E.
- Herlyn M.
- Rustgi A.K.
Materials and Methods
Cells and Conventional Cell Culture
Fibroblast Isolation
In Gel Immunofluorescence
Immunohistochemistry and Histochemistry
Real-Time (Video)microscopy
RNA Isolation, Affymetrix GeneChip Hybridization, Normalization, and Statistical Evaluation
- Gentleman R.C.
- Carey V.J.
- Bates D.M.
- Bolstad B.
- Dettling M.
- Dudoit S.
- Ellis B.
- Gautier L.
- Ge Y.
- Gentry J.
- Hornik K.
- Hothorn T.
- Huber W.
- Iacus S.
- Irizarry R.
- Leisch F.
- Li C.
- Maechler M.
- Rossini A.J.
- Sawitzki G.
- Smith C.
- Smyth G.
- Tierney L.
- Yang J.Y.
- Zhang J.
Pathway Analysis
Western Blot Analysis
Antibodies and Reagents
Transmission Electron Microscopy
Cytokine Arrays and Phospho–Tyrosine Kinase Arrays
Spheroid Formation
Collagen Gel Culture
Results
Multicellular Tumor Spheroid–Fibroblast Co-Culture Experiments in a 3D Collagen Gel Matrix


Phenotypic Characterization and Morphology of the Tumor Cell Clusters
Fibroblast–Tumor Cell Interaction

The in Vitro System Recapitulates Major Features of Colon Carcinomas in Vivo

- Vermeulen L.
- De Sousa E.M.F.
- van der Heijden M.
- Cameron K.
- de Jong J.H.
- Borovski T.
- Tuynman J.B.
- Todaro M.
- Merz C.
- Rodermond H.
- Sprick M.R.
- Kemper K.
- Richel D.J.
- Stassi G.
- Medema J.P.
Fibroblasts Induce Invasive Spreading of LS174T Cells

Expression Profiling

Pathway Analysis
- Mootha V.K.
- Lindgren C.M.
- Eriksson K.F.
- Subramanian A.
- Sihag S.
- Lehar J.
- Puigserver P.
- Carlsson E.
- Ridderstrale M.
- Laurila E.
- Houstis N.
- Daly M.J.
- Patterson N.
- Mesirov J.P.
- Golub T.R.
- Tamayo P.
- Spiegelman B.
- Lander E.S.
- Hirschhorn J.N.
- Altshuler D.
- Groop L.C.
Name | Size | FDR q-val | Description | Reference |
---|---|---|---|---|
MENSE_HYPOXIA_UP | 107 | 0000 | Hypoxia-induced genes in astrocytes and HeLa cells | 49 |
RAS_ONCOGENIC_SIGNATURE | 265 | 0000 | Genes induced by activated H-Ras oncogene in HMECs | 50 |
CHEN_HOXA5_TARGETS_UP | 229 | 0000 | Genes induced by HOXA5 in Hs578T breast cancer cells | 51 |
HINATA_NFKB_UP | 106 | 0000 | Genes up-regulated by NF-κB in keratinocytes and fibroblasts | 52 |
MANALO_HYPOXIA_UP | 94 | 0000 | Genes up-regulated in pulmonary endothelial cells under hypoxia or expressing constitutively active HIF-1α | 53 |
LEE_DENA_UP | 59 | 0000 | Genes up-regulated in hepatoma induced by diethylnitrosamine | 54 |
EMT_UP | 61 | 0000 | Genes upregulated during the TGF-β–induced EMT of Ras-transformed mouse mammary epithelial (EpH4) cells | 55 |
CARIES_PULP_UP | 205 | 0000 | Genes up-regulated in pulpal tissue from extracted carious teeth compared with healthy teeth tissues | 56 |
HYPOXIA_REVIEW | 81 | 0000 | Genes known to be induced by hypoxia | 57 |
GERY_CEBP_TARGETS | 111 | 0000 | Genes up-regulated by inducible C/EBPs in NIH3T3 fibroblasts | 58 |
DORSEY_DOXYCYCLINE_UP | 29 | 0000 | Genes up-regulated by Dox inducible Gab2 (Erk2/Elk1 pathway) in K562 cells | 59 |
HYPOXIA_FIBRO_UP | 20 | 0004 | Genes up-regulated by hypoxia in normal fibroblasts from young and old donors | 60 |
LEE_CIP_UP | 60 | 0004 | Genes up-regulated in hepatoma induced by ciprofibrate | 54 |
IRS_KO_ADIP_UP | 28 | 0006 | Genes up-regulated in preadipocytes with defects in adipocyte differentiation (Irs4 KO, Irs2 KO, Irs3 KO, Irs1 KO) | 61 |

- Mollenhauer J.
- Herbertz S.
- Helmke B.
- Kollender G.
- Krebs I.
- Madsen J.
- Holmskov U.
- Sorger K.
- Schmitt L.
- Wiemann S.
- Otto H.F.
- Grone H.J.
- Poustka A.
- Rosenstiel P.
- Sina C.
- End C.
- Renner M.
- Lyer S.
- Till A.
- Hellmig S.
- Nikolaus S.
- Folsch U.R.
- Helmke B.
- Autschbach F.
- Schirmacher P.
- Kioschis P.
- Hafner M.
- Poustka A.
- Mollenhauer J.
- Schreiber S.
Monitoring Tumor Growth and Apoptosis on Inactivation of the PI3K Pathway

Discussion
- Okawa T.
- Michaylira C.Z.
- Kalabis J.
- Stairs D.B.
- Nakagawa H.
- Andl C.D.
- Johnstone C.N.
- Klein-Szanto A.J.
- El-Deiry W.S.
- Cukierman E.
- Herlyn M.
- Rustgi A.K.
- Muerkoster S.
- Wegehenkel K.
- Arlt A.
- Witt M.
- Sipos B.
- Kruse M.L.
- Sebens T.
- Kloppel G.
- Kalthoff H.
- Folsch U.R.
- Schafer H.
- Rosenstiel P.
- Sina C.
- End C.
- Renner M.
- Lyer S.
- Till A.
- Hellmig S.
- Nikolaus S.
- Folsch U.R.
- Helmke B.
- Autschbach F.
- Schirmacher P.
- Kioschis P.
- Hafner M.
- Poustka A.
- Mollenhauer J.
- Schreiber S.
Acknowledgments
Supplementary data
- Supplemental Figure S1
Collagen gel assays. Spheroids of different tumor cell lines were grown for 3 to 7 days in collagen I gels and photographed. Some cell lines showed strong invasive capacity (SK-OV3, Colo699, KNS5, H446), whereas others remained compact with sharp borders (A549, MCF7, BT474, HT29).
- Supplemental Figure S2
A: Phenotypic characterization of freshly isolated CAFs. CAFs from two different colon carcinoma specimens at low passage numbers (p2-p3) were analyzed for the presence of the mesenchymal marker vimentin, smooth muscle actin (SMA), and the absence of the epithelial cytokeratin 8 (CK8) by immunofluorescence staining. hTERT immortalized BJ-1 SFs are shown as control fibroblasts. B: DNA content and EdU incorporation as determined by flow cytometry revealed similar proliferation rates in the different fibroblasts.
- Supplemental Figure S3
Expression profiling characterization of fibroblasts. Affymetrix GeneChip analysis revealed that the expression of the fibroblast markers fibroblast activation protein α (FAP), vimentin (VIM), THY1, PDGFRα and β, and smooth muscle actin (SMA) (ACTA2) were high in CAF1 (passage number 3) and CCD18-Co NCFs. The fibroblasts were negative for epithelial markers as demonstrated by very low expression of cytokeratin 18 (KRT18) and E-cadherin (CDH1). The expression of blood endothelial markers CD31 (PECAM1), EndoGlyx (MMRN2), VE-cadherin (CDH5), the lymph endothelial marker PROX1, and the pericyte marker NG-2 (CSPG4) was also barely detectable. LS174T epithelial tumor cells and blood endothelial cells (EC) are shown as control. Results are from biological triplicates. The bold centerline indicates the median; the box represents the interquartile range (IQR). Whiskers extend to 1.5 times the IQR.
- Supplemental Figure S4
Cell death in the spheroid core. When HCT116 tumor cell spheroids reached a diameter of approximately 500 μm, cell death occurred in the center of the 3D structures as indicated by the uptake of propidium iodide (PI, red) in living cultures (left). Morphologic examination (H&E) revealed loss of cell-cell contacts in the center of the spheroids accompanied by reduction of phospho-Akt in that central area. Scale bar = 100 μm.
- Supplemental Figure S5
Tumor cell motility. DsRed-labeled LS174T spheroids were co-cultured with colonic fibroblasts and followed by time lapse videomicroscopy for 11 hours. White arrows indicate the track of a single tumor cell (red); the position of the cell was determined every hour (circles).
- Supplemental Figure S6
Illustration of the workflow to obtain a mixture of RNA from tumor cell spheroids (blue cell cluster) and fibroblast (elongated cells in magenta) monocultures and RNA from co-cultures. A defined number of tumor cell spheroids grown for 2 days (96 spheroids initially seeded with 150 LS174T cells) and exactly determined cell numbers of the different fibroblasts (2 × 105) were used. The whole lysates from LS174T monocultures were mixed with fibroblast monoculture lysates (lysates, monoculture mix), thereby ensuring the same amount of tumor and fibroblast components present as in the co-culture experiments (lysates, co-culture). RNA extracted from the mixed monoculture and from the co-culture experiments was processed for Affymetrix GeneChip analysis.
- Supplemental Figure S7
A: Number of regulated genes in co-cultivation experiments compared with mixed monoculture experiments. Genes with a fold change >1.5 and adjusted FDR P values of <0.01 were defined as significantly regulated. Left: Co-cultivation of LS174T spheroids with colon fibroblasts (NF, CAF1, CAF2 + LS174T); numbers of up-regulated genes are shown in red, down-regulated genes are displayed in green. Right: Number of genes specifically regulated by the co-culture of CAFs with tumor cells (CAF1, CAF2 + LS174T). Red: Up-regulated, green: down-regulated. B: Co-culture of LS174T spheroids with CAFs changed cell-cell communication pathways. GSEA identified cell-cell signaling as defined in GO terms. In this set, PCA separated the individual mixed monocultures (blue) from the corresponding co-cultures (red).
- Supplemental Figure S8
Mucin expression in LS174T-fibroblast co-cultures (C) versus monoculture mix (M). Whisker box plots displaying the expression profile of MUC1, MUC2, MUC5AC, MUC5B, and MUC17 (yellow: mixed individual cultures; blue: co-cultures). Results are from biological triplicates after 3.5 days of co-co-cultures or mixed monocultures. The bold centerline indicates the median; the box represents the interquartile range (IQR). Whiskers extend to 1.5 times the IQR.
- Supplemental Figure S9
DMBT1 expression in major human tumors and their normal tissue counterparts in large expression databases (BioExpress, GeneLogic, Affymetrix Human Genome U133 Plus 2.0 GeneChip based database). A: DMBT1 mRNA was expressed in normal colon and increased in colon carcinomas, whereas normal lung was positive for DMBT1 and DMBT1 decreased in lung tumors. B: DMBT1 RNA was significantly increased in mucinous colon carcinomas, esophagus carcinomas, and stomach and pancreas carcinomas. Red: cancer samples; green: normal tissue samples. The bold centerline indicates the median; the box represents the interquartile range (IQR). Whiskers extend to 1.5 times the IQR. Outliers are shown as small circles.
- Supplemental Figure S10
PI3K inhibitor (LY294002) treatment of LS174T colon fibroblast 3D co-cultures. Sections from DMSO control and LY294002 treated co-cultures were stained for cleaved caspase 3 (top) as a marker for apoptotic cells. The number of cleaved caspase 3–positive tumor cells was increased compared with the control. Fibroblast were not affected. Cell proliferation was assessed by the mitosis marker phospho-histone H3 (bottom). LY294002-treated cultures showed reduced numbers of phospho-histone H3–positive tumor cells compared with the DMSO controls. Fibroblasts did not show phospho-histone H3 staining under both conditions.
- Supplemental Table S1
- Supplemental Table S2
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Footnotes
Supported by Boehringer Ingelheim RCV GmbH & Co KG (H.D., C.R., C.P., C.H., N.S., and P.G.C.) and the Herzfelder Family Foundation(H.D.).
Supplemental material for this article can be found at http://ajp.amjpathol.org or doi: 10.1016/j.ajpath.2011.03.015.
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