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Regular article Neurobiology| Volume 179, ISSUE 5, P2519-2532, November 2011

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miRNA Expression Profile after Status Epilepticus and Hippocampal Neuroprotection by Targeting miR-132

Open ArchivePublished:September 26, 2011DOI:https://doi.org/10.1016/j.ajpath.2011.07.036
      When an otherwise harmful insult to the brain is preceded by a brief, noninjurious stimulus, the brain becomes tolerant, and the resulting damage is reduced. Epileptic tolerance develops when brief seizures precede an episode of prolonged seizures (status epilepticus). MicroRNAs (miRNAs) are small, noncoding RNAs that function as post-transcriptional regulators of gene expression. We investigated how prior seizure preconditioning affects the miRNA response to status epilepticus evoked by intra-amygdalar kainic acid in mice. The miRNA was extracted from the ipsilateral CA3 subfield 24 hours after focal-onset status epilepticus in animals that had previously received either seizure preconditioning (tolerance) or no preconditioning (injury), and mature miRNA levels were measured using TaqMan low-density arrays. Expression of 21 miRNAs was increased, relative to control, after status epilepticus alone, and expression of 12 miRNAs was decreased. Increased miR-132 levels were matched with increased binding to Argonaute-2, a constituent of the RNA-induced silencing complex. In tolerant animals, expression responses of >40% of the injury-group-detected miRNAs differed, being either unchanged relative to control or down-regulated, and this included miR-132. In vivo microinjection of locked nucleic acid-modified oligonucleotides (antagomirs) against miR-132 depleted hippocampal miR-132 levels and reduced seizure-induced neuronal death. Thus, our data strongly suggest that miRNAs are important regulators of seizure-induced neuronal death.
      The brain possesses endogenous molecular mechanisms by which it can protect itself from harm, although forewarning is required to bring protection optimally to bear. Thus, mild noxious stressors such as brief ischemia or brief seizures evoke protective adaptations in the brain, which render it powerfully refractory against a subsequent and otherwise damaging insult.
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      In the present study, we used expression profiling to examine how the miRNA response to status epilepticus evoked by intra-amygdalar kainic acid (KA) is altered in a model of epileptic tolerance previously developed by our group.
      • Hatazaki S.
      • Bellver-Estelles C.
      • Jimenez-Mateos E.M.
      • Meller R.
      • Bonner C.
      • Murphy N.
      • Matsushima S.
      • Taki W.
      • Prehn J.H.
      • Simon R.P.
      • Henshall D.C.
      Microarray profile of seizure damage-refractory hippocampal CA3 in a mouse model of epileptic preconditioning.
      We then used a small-molecule-inhibitor approach to model the changes brought on by tolerance and to test whether miRNAs contribute in vivo to seizure-induced neuronal death.

      Materials and Methods

      Animal Model of Epileptic Tolerance

      All animal experiments were performed in accordance with European Communities Council Directive 86/609/EEC and were reviewed and approved by the Research Ethics Committee of the Royal College of Surgeons in Ireland, under license from the Department of Health, Dublin, Ireland. Adult male C57BL/6 mice (20 to 22 g) from Harlan (Oxon, Bicester, UK) were used. Control mice received a single intraperitoneal injection of 0.2 mL saline on day 1 (sham preconditioning), followed by intra-amygdalar vehicle on day 2 (0.2 μL PBS). Injury group mice also received intraperitoneal injection of 0.2 mL saline on day 1, and then underwent status epilepticus induced by intra-amygdalar KA (Sigma-Aldrich, Dublin, Ireland; St. Louis, MO) on day 2. Tolerance mice underwent seizure preconditioning on day 1 via intraperitoneal injection of 0.2 mL KA (15 mg/kg), and then underwent status epilepticus on day 2 induced by intra-amygdalar KA.

      Surgical Procedures

      For intra-amygdalar injections, mice were anesthetized with isoflurane (5% induction, 1% to 2% maintenance) and placed in a mouse-adapted stereotaxic frame. Body temperature was maintained within the normal physiological range with a rectal thermometer and feedback-controlled heat pad (Harvard Apparatus, Kent, UK; Holliston, MA). After a midline scalp incision, the bregma was located and three partial craniectomies were performed for placement of skull-mounted recording screws (Bilaney Consultants, Sevenoaks, Kent, UK). A complete craniectomy was drilled for placement of a guide cannula for intra-amygdalar injections (coordinates from bregma: AP = −0.94 mm, L = −2.85 mm), based on a stereotaxic atlas.
      • Paxinos G.
      • Franklin K.B.J.
      The cannula and electrode assembly was fixed in place with dental cement and the animal was placed in a recording chamber. The electroencephalogram (EEG) was recorded using a Grass Comet XL laboratory-based EEG system (Grass Technologies, Slough, UK; West Warwick, RI). After baseline EEG recordings, the animal was lightly restrained while an injection cannula was lowered 3.75 mm below the brain surface for injection of KA (1 μg) or vehicle in a volume of 0.2 μL into the basolateral amygdala nucleus. After 40 minutes, all mice received lorazepam (Ativan; 6 mg/kg, i.p.). Animals were recorded for up to 1 hour thereafter, before being disconnected and placed in a warmed recovery chamber.
      For intracerebroventricular injections, additional mice were affixed with a cannula ipsilateral to the site of KA injection, as described previously.
      • Murphy B.M.
      • Engel T.
      • Paucard A.
      • Hatazaki S.
      • Mouri G.
      • Tanaka K.
      • Tuffy L.P.
      • Jimenez-Mateos E.M.
      • Woods I.
      • Dunleavy M.
      • Bonner H.P.
      • Meller R.
      • Simon R.P.
      • Strasser A.
      • Prehn J.H.
      • Henshall D.C.
      Contrasting patterns of Bim induction and neuroprotection in Bim-deficient mice between hippocampus and neocortex after status epilepticus.
      Coordinates from the bregma were AP = −0.3 mm, L = −1.0 mm, V = −2.0 mm. Mice received 2 μL infusion of either scrambled or miR-132 antagomir (locked nucleic acid LNA- and 3′-cholesterol-modified oligonucleotides; Exiqon, Vedbaek, Denmark) in artificial cerebrospinal fluid (Harvard Apparatus). Twenty-four hours later, mice were either euthanized or were subjected to status epilepticus, as described above.
      Mice were euthanized at 24 hours after intra-amygdalar injections. Animals were given a pentobarbital overdose and were perfused with ice-cold saline to remove intravascular blood components. Brains for molecular and biochemical work were dissected on dry ice under a microscope and the hippocampus was subdivided to obtain the separate CA3-enriched portion, as described previously.
      • Jimenez-Mateos E.M.
      • Hatazaki S.
      • Johnson M.B.
      • Bellver-Estelles C.
      • Mouri G.
      • Bonner C.
      • Prehn J.H.
      • Meller R.
      • Simon R.P.
      • Henshall D.C.
      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      For histology, mice were first perfused with ice-cold saline and then either perfusion-fixed with paraformaldehyde (4%) or brains were fresh-frozen in 2-methylbutane at −30°C.

      Electroencephalography Analysis

      EEGs were analyzed using TWin software v3.8 (Grass Technologies), and the duration of high-amplitude, high-frequency discharges (also termed type IV seizures) was calculated between the time of KA injection and the time of lorazepam administration.
      • Engel T.
      • Hatazaki S.
      • Tanaka K.
      • Prehn J.H.
      • Henshall D.C.
      Deletion of Puma protects hippocampal neurons in a model of severe status epilepticus.
      Additional frequency and amplitude analysis of EEG was performed using LabChart Pro version 7 software (ADInstruments, Oxford, UK).

      miRNA Extraction and Expression Profiling of Pooled miRNAs

      Total mRNA was extracted using an miRNeasy kit (Qiagen, West Sussex, UK; Valencia, CA) according to the manufacturer's instructions to obtain an enrichment of small RNAs. For each condition, ipsilateral CA3 subfields from three separate mice were pooled together for analysis, and this was repeated using independent samples. Quality and quantity of mRNA was measured using a NanoDrop spectrophotometer (Thermo Scientific, Loughborough, UK; Wilmington, DE), and RNA dilutions were made up in nuclease-free water. Reverse transcription of 250 ng of miRNA from the CA3 subfields from each condition was performed using stem-loop multiplex primer pools (Applied Biosystems, Paisley, UK; Foster City, CA), allowing reverse transcription of 48 different miRNAs in each of eight RT pools. The miRNA quantitative PCR (qPCR) screen was performed on the 7900HT fast real-time system using TaqMan low-density arrays (TaqMan TLDA MicroRNA assays version 1.0 containing 380 human microRNAs assays; Applied Biosystems). Of the profiled human miRNAs, 197 were 100% homologous to mouse. miRNAs were considered differentially expressed at a threshold of ±1.5-fold.
      • Liu D.Z.
      • Tian Y.
      • Ander B.P.
      • Xu H.
      • Stamova B.S.
      • Zhan X.
      • Turner R.J.
      • Jickling G.
      • Sharp F.R.
      Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.

      Stem-Loop Reverse Transcription and Real-Time qPCR of Individual miRNAs

      Reverse transcription for individual qPCRs was performed using 250 ng of total RNA and a high-capacity reverse transcription kit (Applied Biosystems); RT-specific primers for mouse miRNAs miR-27a, miR-92a, miR-101, miR-127, miR-132, miR-145, miR-200a, and miR-326 (Applied Biosystems) were used for all miRNA reverse transcription. Individual qPCRs were performed on the 7900HT fast real-time system (Applied Biosystems) using miR-27a, miR-92a, miR-101, miR-127, miR-132, miR-145, miR-200a, and miR326-specific TaqMan microRNA assays (Applied Biosystems). RNU19 was used for normalization miRNA expression studies, as described previously.
      • Shibata M.
      • Nakao H.
      • Kiyonari H.
      • Abe T.
      • Aizawa S.
      MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors.
      A relative fold change in expression of the target gene transcript was determined using the comparative cycle threshold method (2−ΔΔCT).

      Western Blotting

      Western blot analysis was performed as described previously.
      • Engel T.
      • Murphy B.M.
      • Hatazaki S.
      • Jimenez-Mateos E.M.
      • Concannon C.G.
      • Woods I.
      • Prehn J.H.
      • Henshall D.C.
      Reduced hippocampal damage and epileptic seizures after status epilepticus in mice lacking proapoptotic Puma.
      Hippocampal CA3 subfields were homogenized in a lysis buffer, boiled in gel-loading buffer, separated on SDS-PAGE gels, and transferred onto nitrocellulose membranes. The following primary antibodies were used: Drosha (1:400; Cell Signaling Technology, Danvers, MA), Dicer-1 (1:400; Santa Cruz Biotechnology, Santa Cruz, CA), Argonaute-2 (Ago-2) (1:400; Cell Signaling Technology), and Tubulin (1:2000, Sigma-Aldrich). Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA) and bands were visualized using Pierce SuperSignal West Pico chemiluminescence substrate (Thermo Fisher Scientific, Rockford, IL). Images were captured using a Fuji-Film LAS-300 (Fuji, Sheffield, UK), and densitometry was performed using AlphaEaseFC4.0 gel-scanning integrated optical density software (Alpha Innotech; ProteinSimple, San Leandro, CA).

      Immunoprecipitation of Argonaute-2 (Ago-2)

      Pools of three individual mouse CA3 subfields from each condition were homogenized in 0.7 mL of ice-cold immunoprecipitation buffer (300 mmol/L NaCl, 5 mmol/L MgCl2, 0.1% NP-40, 50 mmol/L Tris-HCl pH 7.5). The homogenate was centrifuged at 16,000 × g for 15 minutes at 4°C and the supernatant was considered as the total cell lysate. Five micrograms of anti-Ago-2 was added to each 400 μg of supernatant in a final volume of 1 mL. The solution was vortex-mixed and incubated overnight at 4°C. After addition of 20 μL of 50% protein-A/G-agarose beads (Santa Cruz Biotechnology), the solution was mixed and incubated for 1 hour at 4°C. The beads were centrifuged at 16,000 × g for 15 minutes at 4°C, and the supernatant was removed. The pellet was washed twice with immunoprecipitation buffer, and miRNA was extracted using an miRNeasy kit (Qiagen, West Sussex, UK). Stem-loop reverse transcription and real-time qPCR (Applied Biosystems) was performed as described above to semiquantify the expression of the miRNA.

      Histopathology

      To characterize seizure-damage in the model, brains from control, injury, and tolerance mice were sectioned at 12 μm on a cryostat (−20°C) at the level of either rostral (AP = −1.58 mm) or medial (AP = −1.82 mm) hippocampus.
      • Paxinos G.
      • Franklin K.B.J.
      Fluoro-Jade B (FJB) staining was performed as described previously.
      • Jimenez-Mateos E.M.
      • Hatazaki S.
      • Johnson M.B.
      • Bellver-Estelles C.
      • Mouri G.
      • Bonner C.
      • Prehn J.H.
      • Meller R.
      • Simon R.P.
      • Henshall D.C.
      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      • Jimenez-Mateos E.M.
      • Mouri G.
      • Conroy R.M.
      • Henshall D.C.
      Epileptic tolerance is associated with enduring neuroprotection and uncoupling of the relationship between CA3 damage, neuropeptide Y rearrangement and spontaneous seizures following intra-amygdalar kainic acid-induced status epilepticus in mice.
      Briefly, tissue sections were allowed to air-dry and then were postfixed in formalin (10%), immersed in 0.006% potassium permanganate solution, rinsed again, and then transferred to FJB solution (0.001% in 0.1% acetic acid) (Millipore-Chemicon Europe, Chandlers Ford, UK; Billerica, MA). Sections were then rinsed again, dried, cleared, and mounted in DPX mounting medium (Sigma-Aldrich). Analysis of DNA damage was performed on fresh-frozen sections using a fluorescein-based TUNEL technique, according to the manufacturer's instructions (Promega, Madison, WI) and as described previously.
      • Engel T.
      • Murphy B.M.
      • Hatazaki S.
      • Jimenez-Mateos E.M.
      • Concannon C.G.
      • Woods I.
      • Prehn J.H.
      • Henshall D.C.
      Reduced hippocampal damage and epileptic seizures after status epilepticus in mice lacking proapoptotic Puma.
      For assessment of neuron loss, sections were fixed, blocked in 5% goat serum, and incubated with antibodies against neuronal nuclear protein (1:500 NeuN; Millipore Ireland, Tullagreen, Cork, Ireland), which was detected using goat anti-mouse Alexa Fluor 568 (Bio-Sciences, Dun Laoghaire, Ireland). Sections were examined using a Nikon 2000s epifluorescence microscope (Micron Optical, Enniscorthy, Ireland) under excitation/emission (Ex/Em) wavelengths of 472/520 nm (green) and 540 to 580/600 to 660 nm (red). Pseudocolor transforms from monochromatic images acquired using an Orca-285 digital camera (Hamamatsu Photonics, Hamamatsu City, Japan) were generated using Adobe Photoshop version 6.0 software. Cell counts were performed for the entire CA3 subfield, beginning at the border with CA2 through to the end of CA3c/CA4 within the hilus of the dentate gyrus. Counts of FJB-, TUNEL- and NeuN-stained cells were the average of two adjacent sections assessed by an observer blinded to experimental group and condition.

      In Situ Hybridization

      For in situ hybridization, mice (n = 3) were perfused with ice-cold PBS followed by paraformaldehyde (4%). Sections (12 μm thick) were mounted on SuperFrost-Plus slides (VWR International, Radnor, PA) and air dried. Using RNase free solutions, slides were washed with PBS and radioimmunoprecipitation assay buffer [150 mL NaCl, 1% (octylphenoxy)polyethoxyethanol (IGEPAL)], 0.5% sodium deoxycholate, 0.1% SDS, 1 mmol/L EDTA, 50 mmol/L Tris pH 8.0) for 5 minutes, then treated with 4% paraformaldehyde for 10 minutes. Sections were washed again and treated with 0.25% acetic anhydride/0.1 mol/L triethanolamine, then rinsed with 0.1% Tween-20/PBS for 5 minutes, treated with 5 μg/mL proteinase K for 4 minutes, and washed with PBS. Next, slides were rinsed in prehybridization buffer (1× saline solution, 50% formamide, and 1× Denhardt's solution) for 1 hour at 56°C (melting temperature Tm = −20°C, as specified by Exiqon). The probe to detect mi-132 was 5′-digoxigenin-labeled, 2′-O,4′-C-methylene bicyclonucleoside monomer-containing oligonucleotide (LNA-modified). The sequence was the reverse complement to the mature miRNA. Probes were incubated 1:200 in hybridization buffer (1× saline solution, 50% formamide, and 1× Denhardt's plus 10% dextran sulfate) overnight at 56°C in a humidified chamber. On the next day, sections were washed in FAM buffer (2× SSC, 50% formamide, and 0.1% Tween 20) for 1 hour at 60°C. Then sections were rinsed in B1 buffer (150 mmol/L NaCl, 100 mmol/L maleic acid, and 0.4% IGEPAL pH, 7.5) for 1 hour at room temperature and in B2 buffer (2% blocking reagent and 10% goat serum in B1 buffer) for 30 minutes. Anti-DIG-PA antibody (1:1000; Roche Applied Science, Indianapolis, IN) was incubated in B2 buffer overnight at 4°C. On the next day, sections were washed in B1 buffer and incubated in B3 buffer (100 mmol/L NaCl, 50 mmol/L MgCl2, 0.025% Tween 20 and 100 mmol/L Trizma pH9.5) for 30 minutes. Then, 200 μL of color substrate solution [nitroblue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (BNT/BCIP stock solution; Roche Applied Science)] diluted 1:50 in B3 buffer was added to each slide until the signal appeared. Slides were then rinsed, mounted, and coverslipped.

      Statistical Analysis

      All data are presented as means ± SEM. Two-group comparisons were made using Student's t-test; multigroup comparisons were made using analysis of variance followed by appropriate post hoc testing. Significance was set at P < 0.05.

      Results

      Reduced Hippocampal CA3 Damage after Status Epilepticus in Epileptic Tolerance

      In our experimental paradigm (Figure 1A), status epilepticus was focally evoked by intra-amygdalar KA. This approach avoids direct neurotoxin-associated effects that could complicate attributing miRNA changes to seizures alone (eg, in models in which KA is injected either systemically or intrahippocampally). The histopathological features of the tolerance model were as previously reported.
      • Jimenez-Mateos E.M.
      • Hatazaki S.
      • Johnson M.B.
      • Bellver-Estelles C.
      • Mouri G.
      • Bonner C.
      • Prehn J.H.
      • Meller R.
      • Simon R.P.
      • Henshall D.C.
      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      • Hatazaki S.
      • Bellver-Estelles C.
      • Jimenez-Mateos E.M.
      • Meller R.
      • Bonner C.
      • Murphy N.
      • Matsushima S.
      • Taki W.
      • Prehn J.H.
      • Simon R.P.
      • Henshall D.C.
      Microarray profile of seizure damage-refractory hippocampal CA3 in a mouse model of epileptic preconditioning.
      • Jimenez-Mateos E.M.
      • Mouri G.
      • Conroy R.M.
      • Henshall D.C.
      Epileptic tolerance is associated with enduring neuroprotection and uncoupling of the relationship between CA3 damage, neuropeptide Y rearrangement and spontaneous seizures following intra-amygdalar kainic acid-induced status epilepticus in mice.
      In non-preconditioned mice subjected to status epilepticus (ie, in the injury group), the ipsilateral hippocampal CA3 subfield was extensively damaged, as evidenced by FJB staining at 24 hours (Figure 1, B and D). In this model, only few FJB-positive cells are found in the ipsilateral CA1 subfield (Figure 1D). FJB staining was consistently found within the CA4/hilar region of the dentate gyrus, but not in the granule cell layer (Figure 1D). Hippocampal CA3 damage was significantly reduced in mice given seizure preconditioning 24 hours before status epilepticus (tolerance group; Figure 1, B and D). The duration of high-amplitude, high-frequency electrographic seizures did not show a significant difference between injury and tolerance mice (Figure 1, E and F). Thus, seizure preconditioning reduces hippocampal damage independently of changes to the overall severity of the status epilepticus.
      Figure thumbnail gr1
      Figure 1Epileptic tolerance is associated with reduced damage to the CA3 subfield. A: Schematic of the experimental paradigm. On day 1, animals receive intraperitoneal injection of either vehicle (veh) or seizure preconditioning [PC; 15 mg/kg kainic acid (KA), i.p.]. On day 2, mice receive intra-amygdalar injection of either vehicle or kainic acid (1 μg) to induce status epilepticus (SE), and on day 3 brains are extracted. B: Fluoro-Jade B (FJB) positive cell counts in the ipsilateral CA3 subfield 24 hours after status epilepticus in mice in the injury (Inj), tolerance (Tol), and nonseizure control (Con) groups (*P < 0.05 versus Inj, n = 4 per group). C: Bok enrichment in the microdissected CA3 subfield compared with CA1 (*P < 0.05 versus CA1, n = 3 per group). D: Representative photomicrographs showing FJB staining at 24 hours in each group within (top) CA3, (middle) hilus-dentate gyrus (DG) and (bottom) CA1. Note the reduction in numbers of damaged neurons (arrows) in tolerance mice in the CA3 and hilus-DG regions, compared with injury mice. str. pyr., stratum pyramidale; str. gr., stratum granulosum. Original magnification, ×4. Scale bar, 500 μm. E: Duration of high-amplitude, high-frequency discharges (HAHFDs) in injury and tolerance mice during status epilepticus. F: EEG during status epilepticus for each group from representative animals showing similarity of frequency and amplitude.
      Because in this model the CA3 subfield was the major site for both damage and protection from damage, we performed all biochemical and molecular studies on the isolated CA3 subfield. This was achieved by microdissection (as described under Materials and Methods) with minimized contamination of undamaged or minimally injured fields that might obscure or dilute miRNA changes. CA3 samples were confirmed as being enriched by real-time qPCR analysis of the CA3-specific gene bok,
      • Lein E.S.
      • Zhao X.
      • Gage F.H.
      Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization.
      which was present in CA3 but nearly absent from CA1 samples (Figure 1C).

      miRNA Biogenesis Pathway in Injury and Tolerance

      To establish the presence of miRNA biogenesis pathway components in the model, we examined expression of Dicer, Drosha, and Ago-2 by Western blotting. Each protein was present in the CA3 subfield in control, injury, and tolerance mice at 24 hours. All three proteins were present at the predicted molecular weight: Drosha at ∼160 kDa, Dicer at ∼220 kDa, and Ago-2 (also known as eukaryotic translation initiation factor 2C 2) at ∼90 kDa (Figure 2A). Protein levels of each were not significantly altered in animals subjected to status epilepticus (Figure 2B).
      Figure thumbnail gr2
      Figure 2miRNA biogenesis components in injury and tolerance. A: Immunoblots of CA3 subfield whole-cell lysates from control, injury, and tolerance mice (n = 1 per lane) obtained 24 hours after intra-amygdalar injections show expression of Dicer, Drosha, and Ago-2. α-Tubulin is included as a guide to protein loading. B: Densitometry for each protein. Values are in arbitrary units. n = 3 per group.

      Hippocampal CA3 miRNA Transcriptome after Status Epilepticus

      We next compared the mature miRNA expression profile of the CA3 subfields from control animals, mice subjected to status epilepticus without preconditioning (injury group), and mice given seizure preconditioning 24 hours before status epilepticus (tolerance group). A heat map shows the patterns of miRNA expression among the three different experimental groups (Figure 3A). A total of 45 mature miRNAs were called as present in the CA3 subfield of nonseizure control mice on the basis of qPCR detection in two independent experiments under the cutoff point (≤35 cycle times).
      Figure thumbnail gr3
      Figure 3miRNA expression profile in injury and tolerance mice. A: Heat map depicting miRNA expression data for each group relative to control. Fewer miRNAs were up-regulated and more were down-regulated in tolerance mice, compared with injury mice. B: Percentage of the detected miRNAs in each seizure group as unchanged, up-regulated, or down-regulated, relative to control. C: Numbers of miRNAs and their overlap between injury and tolerance groups for those increased and decreased, relative to control. D: Percentage of up-regulated and down-regulated miRNAs that were commonly or differentially regulated between injury (Inj) and tolerance (Tol).
      There were prominent changes to miRNA expression in mice subjected to status epilepticus alone (Figure 3A and Table 1). Compared with control, 54% of miRNAs were increased in expression after status epilepticus and ∼21% were decreased (Figure 3B). Expression of ∼25% of the remaining detected miRNAs was unchanged after status epilepticus (Figure 3B). All miRNAs present in the injury group were also detected in control animals, whereas miR-518b, miR-518c, miR-520c, and miR-520g were below cutoff in both injury and tolerance mice. The miRNAs showing altered expression after status epilepticus are listed in Table 1. The median miRNA up-regulation in injury was 5.4-fold; however, the scale of miRNA up-regulation was dramatic for several miRNAs, including >20-fold for miR-132, miR-219 and miR-323 and between ∼45-fold and ∼144 fold for miR-21, miR-507, and miR-518d. The median miRNA down-regulation was a 3.6-fold decrease; however, the range between the down-regulated miRNAs included 22-fold decrease for miR-657 and >50-fold decrease for miR-520b.
      Table 1Differential miRNA Expression in Injury and Tolerance, Relative to Control
      miRNAInjuryTolerancemiRNAInjuryTolerance
      miR10b8.541.0miR3266.93−5.27
      miR2144.5821.66miR3281.41.22
      miR-27a2.5−3.31miR330−3.89−7.69
      miR29a1.861.18miR374−2.76−10.1
      miR30e1.920.78miR37512.311.10
      miR1010.8−3.5miR381−4.76−6.58
      miR1030.99−1.77miR422b−4.33−2.70
      miR1071.01−2.35miR4252.161.05
      miR125a0.90.7miR4513.444.33
      miR1270.93−1.50miR487b1.461.15
      miR13222.21.15miR497−2.35−3.67
      miR133b−3.76−3.11miR50776.911.0
      miR1342.492.21miR5097.8913.93
      miR1396.561.06miR518bn.dND
      miR1451.15−1.61miR518cn.dND
      miR146b3.911.22miR518d143.9270.40
      miR148b1.01−2.16miR520b−52.63−39.21
      miR1536.650.85miR520cn.dND
      miR181c1.010.90miR520gn.dND
      miR199a7.501.49miR5321.470.83
      miR200a6.99−3.14miR6291.02229
      miR21922.965.16miR657−22.2−3.57
      miR32322.621.38
      The miRNA was extracted from the ipsilateral CA3 subfield 24 hours after focal-onset status epilepticus in animals that had previously received either seizure preconditioning (tolerance) or no preconditioning (injury). Values represent the fold difference relative to control for miRNAs expressed in injury and tolerance.
      ND, not detected (expression in injury and tolerance was below the 35 cycle cutoff).

      Altered miRNA Profile in Epileptic Tolerance

      The miRNA response to status epilepticus in preconditioned mice differed in several aspects from that generated by status epilepticus alone (Figure 3 and Table 1). Only a fraction (18%) of miRNA expression was increased in epileptic tolerance, compared with the control; a much larger proportion was down-regulated (∼60%). The proportion of miRNAs that remained unchanged relative to control was similar to that of the injury group (∼25%) (Figure 3B). One miRNA (miR-629) was uniquely expressed in epileptic tolerance samples, but it was outside the 35-cycle cutoff point in the control and injury groups.
      The overlap between injury and tolerance for up-regulated and down-regulated miRNAs is shown as Venn diagrams in Figure 3C. Five miRNAs were up-regulated in both injury and tolerance groups; 15 miRNAs were uniquely up-regulated in the injury group and 1 miRNA was uniquely up-regulated in the tolerance group. Among the up-regulated miRNAs common to both groups, the scale of increase was usually greater in the injury than in the tolerance group.
      Among down-regulated miRNAs, 12 were common to both injury and tolerance groups (Figure 3, C and D). There were no uniquely down-regulated miRNAs in the injury group (Figure 3, C and D). In the tolerance group, eight miRNAs were uniquely down-regulated. The scale of down-regulation was typically greater in tolerance than injury for a given miRNA (Table 1).
      Of particular note, a subset of miRNAs displayed opposite regulation between injury and tolerance. Expression of miR-27a, miR-200a, and miR-326 were all increased after status epilepticus alone, but were decreased in epileptic tolerance.

      Validation of TaqMan Screen

      To validate the TLDA card results, we chose a selection of miRNAs from among those up-regulated in injury (miR-132, miR-200a, and miR-326) and those down-regulated in tolerance (miR-101, miR-127 and miR-145) for individual real-time qPCR verification using miRNA specific primers (as described in Materials and Methods). Individual qPCR validation of the screening results showed high reproducibility (Figure 4 and Figure 5B). However, the scale of the fold increase or decrease tended to be at variance between the two methods. In particular, the very high levels of up-regulation seen for some miRNAs with the TLDA approach were more limited with the individual qPCR. One miRNA reported to be up-regulated in injury on the TLDA analysis (miR-200a) was not confirmed by individual qPCR (1.2 ± 0.3 fold change in injury compared with control, P > 0.05).
      Figure thumbnail gr4
      Figure 4Real-time qPCR analysis of miRNA expression responses in injury and tolerance. Expression (mature levels) of miR-326 (A), miR-101 (B), miR-127 (C), and miR-145 (D) at 24 hours for injury (Inj) or tolerance (Inj) mice, compared with control (Con). Data were corrected to levels of RNU19. Fold-change values (boxed) were obtained from the TaqMan low-density array profiling experiment for comparison. n = 4 per group. *P < 0.05; **P < 0.01 versus Con.
      Figure thumbnail gr5
      Figure 5Differentially up-regulated in injury miR-132 binds Ago-2 after seizures. A: Photomicrograph (top) showing in situ hybridization of miR-132 in the CA3 subfield of the mouse hippocampus, confirming expression in pyramidal neurons. Lower left: Enlarged view of inset in main image. Lower right: staining with a sense probe. Original magnification, ×20. Scale bar, 90 μm. B: Real-time qPCR measurement of miR-132 expression in the CA3 and CA1 subfields 24 hours after status epilepticus in injury (Inj) and tolerance (Tol) mice. *P < 0.05 versus control (Con); ns, nonsignificant. C, top: Immunoprecipitation of RNA-induced silencing complex component Ago-2 from mouse CA3. Immunoblot showing Ago-2 eluted by anti-Ago-2 from CA3 lysates (a pool of n = 3), but not when the primary antibody was omitted (−Ab). Whole cell lysates (+ve) were used, to confirm the molecular weight. C, bottom: Schematic of the elution procedure for extracting and identifying Ago-2-bound miRNA. D: Real-time qPCR analysis of Ago-2-eluted miR-132 and miR-27a in Con and Inj mice. *P < 0.05 versus Con. n = 3 per group.

      Increased Binding of miR-132 to Ago-2 after Status Epilepticus

      Among the differentially expressed miRNAs, the predominance of up-regulation among injury genes and down-regulation or lack of change in tolerance implies that neuroprotection may be due in part to reduced levels of certain miRNAs. We selected miR-132 (Table 1) as a candidate for further analysis because the strong up-regulation seen in injury was completely prevented in tolerance, and also because it is has been shown to have a role in regulating neuronal structure,
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      A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis [Erratum appeared in Proc Natl Acad Sci USA 2006, 103:825].
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      Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132 [Erratum appeared in Neuron 2010, 68:161].
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      • Mandel G.
      • Goodman R.H.
      microRNA-132 regulates dendritic growth and arborization of newborn neurons in the adult hippocampus.
      but has not previously been linked to control of neuronal death.
      In situ hybridization was first used to confirm that miR-132 is constitutively expressed in CA3 pyramidal neurons in the mouse hippocampus (Figure 5A). Next, using individual real-time qPCR we confirmed that miR-132 was up-regulated in the CA3 subfield after status epilepticus alone, but levels were the same as control in seizure-preconditioned mice subjected to status epilepticus (Figure 5B). We also examined the expression of miR-132 in the CA1 subfield, which is not significantly damaged in the injury model. In contrast to findings for CA3, miR-132 was not up-regulated in the CA1 subfield after status epilepticus alone (Figure 5B).
      Ago-2 both contributes to miRNA-mRNA pairing and influences whether mRNA stability is reduced or mRNA is cleaved.
      • Krol J.
      • Loedige I.
      • Filipowicz W.
      The widespread regulation of microRNA biogenesis, function and decay.
      • Kim V.N.
      • Han J.
      • Siomi M.C.
      Biogenesis of small RNAs in animals.
      • Peters L.
      • Meister G.
      Argonaute proteins: mediators of RNA silencing.
      We next asked whether increased levels of mature miRNA also lead to increased loading into the RNA-induced silencing complex. Accordingly, we examined miR-132 association with Ago-2 using CA3 samples from the injury group. Ago-2 was readily immunoprecipitated from hippocampal CA3 lysates (Figure 5C). Ago-2 was then immunoprecipitated from control and seizure-damaged CA3 subfields at 24 hours and bound miRNA was extracted (Figure 5C). Ago-2-eluted miR-132 was then identified by PCR. miR-132 was present at low levels in Ago-2 immunoprecipitates in control CA3 lysates (Figure 5D). Levels of miR-132 were significantly increased in Ago-2 samples from seizure-damaged mice (Figure 5D). As a control for the specificity of the miR-132 finding, we analyzed expression of miR-27a, a second seizure-up-regulated miRNA. miR-27a was also detected after Ago-2 pull-down assay, but levels were not increased relative to control (Figure 5D). Thus, increased loading of miRNAs into Ago-2 is not typical for all seizure-up-regulated miRNAs.

      In Vivo Depletion of miR-132 Using Antagomirs

      To determine whether miR-132 contributed to neuronal death after seizures in vivo, we used locked nucleic acid (LNA)-modified and 3′ cholesterol-conjugated anti-miR-132 oligonucleotides (ie, antagomirs) to reduce brain levels of miR-132 before status epilepticus. Previous work has shown that antagomirs cause a pronounced reduction of their miRNA targets.
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      Silencing of microRNAs in vivo with ‘antagomirs’.
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      Specificity, duplex degradation and subcellular localization of antagomirs.
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      LNA-mediated microRNA silencing in non-human primates.
      In our experiments, miR-132 antagomirs or a nontargeting scrambled version were injected intracerebroventricularly into mice at various doses. Effective miRNA depletion was confirmed by extracting the CA3 subfield of the hippocampus and measuring miRNA levels by individual real-time qPCR. A dose of 0.5 nmol antagomir significantly reduced miR-132 levels at 24 hours, whereas 0.12 nmol had no effect (Figure 6A). The same dose (0.5 nmol) of scrambled antagomir had no effect on miR-132 levels. Suppression of miR-132 was greater when 1.0 nmol of antagomir was injected (Figure 6A); however, the matching dose of scrambled antagomir also depleted miR-132 from brain (Figure 6A). As a further control, we examined the effects of miR-132 antagomirs and scrambled antagomirs on the levels of miR-92a, an unrelated miRNA (Figure 6B). Injection of 0.12 or 0.5 nmol of miR-132 antagomir or scrambled antagomir did not alter expression of miR-92a (Figure 6B). In contrast, at the highest dose of scrambled antagomir (1.0 nmol), but not of miR-132-targeting antagomirs, levels of miR-92a were significantly reduced (P < 0.0001; Figure 6B).
      Figure thumbnail gr6
      Figure 6Effects of miR-132 antagomirs on normal brain and seizure EEG during status epilepticus. A and B: Real-time qPCR measurements of (A) miR-132 and (B) miR-92a levels in hippocampal CA3 extracts 24 hours after intracerebroventricular injection of miR-132-targeting antagomirs (Ant-132) or a nontargeting antagomir control (scrambled). **P < 0.01 and ***P < 0.0001 versus scrambled and artificial cerebrospinal fluid (CSF); P < 0.05 versus same-dose scrambled (n = 3 per group). C: NeuN counts in tissue sections at different levels of the hippocampus in animals injected 24 hours earlier with either scrambled (Scr) or the miR-132 antagomir (Ant-132) (n = 3 per group). D: EEG parameters during status epilepticus in scrambled and antagomir-132 mice (n = 4 to 8 per group). E and F: Frequency, amplitude and total power parameters during seizure EEG for a representative scrambled-antagomir-treated mouse and an antagomir-132-treated mouse during status epilepticus.

      Effects of Antagomirs on the Hippocampus and EEG Parameters

      To determine whether anti-miR-132 or scrambled antagomir injection had any general cytotoxic effects, we performed neuron counts and stained for FJB and irreversible DNA damage using TUNEL.
      • Engel T.
      • Murphy B.M.
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      • Jimenez-Mateos E.M.
      • Concannon C.G.
      • Woods I.
      • Prehn J.H.
      • Henshall D.C.
      Reduced hippocampal damage and epileptic seizures after status epilepticus in mice lacking proapoptotic Puma.
      Counts of NeuN-immunostained sections at the level of rostral and medial hippocampus from mice injected 24 hours earlier with 0.5 nmol of the antagomirs revealed no neuron loss (Figure 6C). No FJB staining was evident in hippocampal sections from mice injected with either scrambled or miR-132 antagomir (data not shown). No TUNEL-positive cells were found in scrambled antagomir-injected mice in either rostral or medial hippocampus. A single TUNEL-positive cell was present in rostral hippocampus from one miR-132 antagomir-injected mouse. In sections from the medial hippocampus, two miR-132 antagomir mice had a single TUNEL-positive cell and one mouse had two TUNEL-positive cells. These differences were not significant, compared with the scrambled antagomir group (data not shown).
      Because miR-132 regulates neuronal structures both in vitro and in vivo,
      • Schratt G.M.
      • Tuebing F.
      • Nigh E.A.
      • Kane C.G.
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      A brain-specific microRNA regulates dendritic spine development [Erratum in Nature 2006, 441:902].
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      • Batterton M.N.
      • Tada T.
      • Dolan B.M.
      • Sharp P.A.
      • Sheng M.
      Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132 [Erratum appeared in Neuron 2010, 68:161].
      • Christensen M.
      • Larsen L.A.
      • Kauppinen S.
      • Schratt G.
      Recombinant adeno-associated virus-mediated microRNA delivery into the postnatal mouse brain reveals a role for miR-134 in dendritogenesis in vivo.
      we explored whether seizures were different in mice with depleted miR-132. Mice were injected with 0.5 nmol anti-miR-132 or scrambled antagomir injection 24 hours before induction of status epilepticus. Analysis of multiple components of the EEG recorded at the time of status epilepticus (ie, duration of high-amplitude, high-frequency discharges, EEG total power, and EEG frequency) revealed no significant differences (Figure 6, D–F).

      Depletion of miR-132 Protects Hippocampal CA3 against Status Epilepticus

      Last, we examined tissue sections from mice 24 hours after status epilepticus that received either 0.5 nmol of the antagomir targeting miR-132 or the scrambled version. No animals died after status epilepticus in either group. Scrambled-treated mice subjected to status epilepticus displayed typical CA3 damage in the rostral hippocampus as evidenced by FJB staining, TUNEL, and loss of NeuN staining (Figure 7, A and D). In contrast, mice injected with anti-miR-132 showed significantly fewer FJB counts, less TUNEL staining, and significantly more surviving neurons (Figure 7, A, C, and D). Analysis of the medial hippocampus showed the same protective trend (Figure 7, B and C). That is, anti-miR-132 significantly reduced FJB and TUNEL counts, and increased numbers of surviving neurons. Representative FJB, TUNEL, and NeuN staining of the medial hippocampus for each group is shown in Figure 7D.
      Figure thumbnail gr7
      Figure 7Depletion of miR-132 protects hippocampal CA3 against seizure-induced neuronal death. A and B: FJB and TUNEL counts 24 hours after status epilepticus for rostral (A), and medial hippocampus (B), showing the neuroprotective effect of antagomirs against miR-132 (Ant-132) compared with scrambled antagomir. C: NeuN counts in rostral and medial sections of hippocampus for each group. *P < 0.05, **P < 0.01, and ***P < 0.0001 versus scrambled antagomir. n = 4 to 8 per group. D: Representative photomicrographs of FJB, TUNEL, and NeuN staining in the ipsilateral CA3 subfield 24 hours after status epilepticus in mice injected with either scrambled or miR-132 antagomirs. Original magnification, ×20. Scale bar, 185 μm.
      Finally, a statistical analysis
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      High breakdown point and high efficiency robust estimators for regression.
      of the relationship between seizure damage and seizure duration in scrambled and miR-132 antagomir-treated mice was performed (see Supplemental Figure S1 at http://ajp.amjpathol.org). The analysis revealed a significant correlation between seizure duration and seizure damage in scrambled antagomir-treated mice; this association was lost in animals injected with miR-132 antagomir. Thus, by protecting against seizure-induced neuronal death, miR-132 antagomir uncoupled the relationship between seizure duration and damage.

      Discussion

      In the present study, we characterized the transcriptional response of mature miRNAs to status epilepticus evoked by intra-amygdalar KA and showed this to be altered in the hippocampus of tolerant mice (ie, preconditioned animals). Compared with status epilepticus alone, miRNA expression responses in tolerance were often reduced or were regulated in the opposite direction. We also showed that in vivo depletion of miR-132, one of the differentially up-regulated miRNAs in injury, reduced neuronal death after status epilepticus. These findings contribute to our understanding of the molecular mechanisms of tolerance and support miRNAs as novel determinants of seizure-induced neuronal death.
      From initial work on single metabolites and genes,
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      an appreciation has emerged that tolerance is associated with large-scale, genomic reprogramming that involves altered expression of hundreds of genes.
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      Induction of cerebral ischemic tolerance by erythromycin preconditioning reprograms the transcriptional response to ischemia and suppresses inflammation.
      The present study builds on our understanding of the molecular processes that underlie epileptic tolerance and introduces an important new contributor, namely, miRNAs. Previously, microarray analyses showed that the response of protein-coding genes in the CA3 subfield of the hippocampus to status epilepticus is profoundly altered in animals previously preconditioned by brief seizures, with widespread down-regulation, particularly of genes implicated in excitotoxicity.
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      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      Our present results show that status epilepticus also produces profound changes in the expression of miRNAs. Expression of more than half the detected mature miRNAs increased in the hippocampus in the injury group, indicating major transcriptional regulation of miRNAs. Because miRNAs are capable of regulating large numbers of mRNA transcripts, our data support other recent work
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      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      suggesting that miRNAs contribute to the gene expression environment of status epilepticus.
      Although the mechanism by which miRNAs function differs from RNA interference, miRNAs have nevertheless been reported to directly reduce mRNA levels in cells.
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      Mammalian microRNAs predominantly act to decrease target mRNA levels.
      Given that mRNAs for hundreds of protein-coding genes are reduced in epileptic tolerance relative to status epilepticus alone,
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      • Mouri G.
      • Bonner C.
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      • Meller R.
      • Simon R.P.
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      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      one prediction for the present study would have been to see greatly increased miRNA expression in tolerant animals. This was not found, however. Instead, the differential miRNA regulation in epileptic tolerance was mainly a block of the up-regulation of miRNAs after status epilepticus in combination with down-regulation of a set of miRNAs not ordinarily regulated after status epilepticus alone. Thus, the miRNA transcriptome of epileptic tolerance is most characterized by a suppression of the normal regulated responses of miRNAs after status epilepticus.
      Our immunoblotting results suggest that changes to miRNA biogenesis components are not responsible for the miRNA profile in epileptic tolerance. A necessary next step is to identify the mRNA targets targeted by miRNA changes in tolerance. This is not straightforward, and it is generally inappropriate to use exclusively bioinformatics tools predicting mRNA targets of miRNAs to identify the pathways affected and assert functional consequences, as has been reported,
      • Hu K.
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      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      without direct experimental validation that a particular miRNA can target an mRNA and alter translation.
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      MicroRNAs as effectors of brain function with roles in ischemia and injury, neuroprotection, and neurodegeneration.
      The identification and experimental validation of the mRNA targets of the tolerance-regulated miRNAs will enable full evaluation of their potential as effectors of the neuroprotection.
      How does the profile in epileptic tolerance compare to that of ischemic tolerance? Reduction of miRNA regulation is found after stroke in ischemic preconditioned mice,
      • Lusardi T.A.
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      Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
      whereas differential up-regulation of miRNAs, reported to be instigated by ischemic preconditioning,
      • Dharap A.
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      Ischemic pre-conditioning alters cerebral microRNAs that are upstream to neuroprotective signaling pathways.
      • Lee S.T.
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      MicroRNAs induced during ischemic preconditioning.
      • Lusardi T.A.
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      • Yang T.
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      Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
      was not a feature of epileptic tolerance. Does a set of miRNAs appear in common across these different models of tolerance? This might be expected, because there is crossover between categories of genes in ischemic and epileptic tolerance, including transport genes.
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      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      There are miRNAs down-regulated in both epileptic tolerance and ischemic tolerance, including miR-330 and miR-497. However, these are also down-regulated after status epilepticus alone, suggesting that they could not as such account for tolerance. In fact, only miR-27a appears to be regulated in the same direction in both epileptic and ischemic tolerance, with the direction opposite from its response to injury (Lusardi et al
      • Lusardi T.A.
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      and present study). However, the absence of changes in RNA-induced silencing complex uptake of miR-27a during Ago-2 analysis casts doubt on a functional influence.
      It is notable that some of the mRNA and protein changes inducing the neuroprotection seen in tolerance are similar to the alterations that enable cells to evade apoptosis in cancer, such as increased Bcl-2 and polycomb group protein levels.
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      It is tempting to draw parallels again between the miRNA changes that characterize tolerance and the frequent, global down-regulation of miRNAs and their biogenesis machinery in many tumors.
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      The present study also provides in vivo evidence that modulation of a seizure-regulated miRNA can influence neuropathologic outcome after status epilepticus. miR-132 has previously been reported to be expressed in mouse hippocampus,
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      which we also confirmed in the present study using both PCR and in situ hybridization. We used antagomirs to reduce hippocampal miR-132 levels, thereby modeling the tolerance-induced miR-132 profile. Antagomirs are known to function by complementary binding that leads to non-RNAi-mediated degradation of the miRNA.
      • Krützfeldt J.
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      Specificity, duplex degradation and subcellular localization of antagomirs.
      Our present experiments showed that antagomirs targeting miR-132 profoundly reduce neuronal death within the CA3 sector after seizures. The mechanism of this protection is as yet unknown. Known targets of miR-132 include p250 GTPase-activating protein,
      • Vo N.
      • Klein M.E.
      • Varlamova O.
      • Keller D.M.
      • Yamamoto T.
      • Goodman R.H.
      • Impey S.
      A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis [Erratum appeared in Proc Natl Acad Sci USA 2006, 103:825].
      and miR-132 can promote dendritic growth and arborization in response to neuronal activity
      • Wayman G.A.
      • Davare M.
      • Ando H.
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      An activity-regulated microRNA controls dendritic plasticity by down-regulating p250GAP.
      and spine morphogenesis.
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      Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132 [Erratum appeared in Neuron 2010, 68:161].
      A small effect of the antagomirs on seizure duration was noted, although the present and previous
      • Murphy B.
      • Dunleavy M.
      • Shinoda S.
      • Schindler C.
      • Meller R.
      • Bellver-Estelles C.
      • Hatazaki S.
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      analyses of the statistical relationship between seizure time and damage in the model argue against this accounting for the neuroprotection. More likely, the neuroprotection relates to changes in cell death signaling pathways, rather than altered seizure severity. Of note, at least 5 of the 21 protein-coding genes differentially down-regulated in injury in our previous microarray screen
      • Jimenez-Mateos E.M.
      • Hatazaki S.
      • Johnson M.B.
      • Bellver-Estelles C.
      • Mouri G.
      • Bonner C.
      • Prehn J.H.
      • Meller R.
      • Simon R.P.
      • Henshall D.C.
      Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
      have predicted miR-132 binding sites within their 3′UTR (Adrbk2, Grm7, Ntng1, Slc40a1 and Vgll3; D.H. and R.S., unpublished observations). The present study also reveals an unexpected effect of higher doses of the scrambled antagomir reducing miRNA levels of both miR-132 and the unrelated miR-92a. This observation, which may be due to off-target effects, underscores the need for full dose-response evaluation of supposedly inactive scrambled antagomirs.
      Increased expression of miR-132 after status epilepticus alone was also reported after pilocarpine-induced seizures, in a CREB-dependent manner.
      • Nudelman A.S.
      • DiRocco D.P.
      • Lambert T.J.
      • Garelick M.G.
      • Le J.
      • Nathanson N.M.
      • Storm D.R.
      Neuronal activity rapidly induces transcription of the CREB-regulated microRNA-132, in vivo.
      Thus, findings on this particular miRNA using the intra-amygdalar KA model can be extrapolated to other seizure models. Our data show, however, that miR-132 was not induced in the CA3 subfield in tolerance mice, nor in the CA1 that is uninjured after status epilepticus alone. Transcriptional control of miR-132 can therefore be dissociated from strong neuronal activity. Moreover, because down-regulation of miR-132 has been implicated in ischemic tolerance by enabling MECP2 protein translation,
      • Lusardi T.A.
      • Farr C.D.
      • Faulkner C.L.
      • Pignataro G.
      • Yang T.
      • Lan J.
      • Simon R.P.
      • Saugstad J.A.
      Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
      and because CREB has been implicated as an effector of ischemic tolerance,
      • Hara T.
      • Hamada J.
      • Yano S.
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      CREB is required for acquisition of ischemic tolerance in gerbil hippocampal CA1 region.
      • Meller R.
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      CREB-mediated Bcl-2 protein expression after ischemic preconditioning.
      our data identify a mechanistic difference between ischemic and epileptic tolerance. We also note that miR-132 can have an anti-inflammatory role by targeting acetylcholinesterase.
      • Shaked I.
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      MicroRNA-132 potentiates cholinergic anti-inflammatory signaling by targeting acetylcholinesterase.
      Because inflammation and blood-brain barrier opening have been implicated in ictogenesis and epileptogenesis,
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      The role of inflammation in epilepsy.
      we cannot exclude possible favorable effects of elevated miR-132 levels in other seizure models.
      Two recent studies have profiled miRNA transcriptional responses after experimental status epilepticus, but in each case miRNA was obtained from the entire hippocampus.
      • Liu D.Z.
      • Tian Y.
      • Ander B.P.
      • Xu H.
      • Stamova B.S.
      • Zhan X.
      • Turner R.J.
      • Jickling G.
      • Sharp F.R.
      Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
      • Hu K.
      • Zhang C.
      • Long L.
      • Long X.
      • Feng L.
      • Li Y.
      • Xiao B.
      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      This limits interpretation, because of the well-established transcriptional heterogeneity among hippocampal subfields.
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      Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization.
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      Quantitative transcriptional neuroanatomy of the rat hippocampus: evidence for wide-ranging, pathway-specific heterogeneity among three principal cell layers.
      Indeed, we show that an individual miRNA can display large intersubfield expressional differences in the same model (Figure 5B). It is perhaps not surprising, therefore, that comparison with the findings of Liu et al,
      • Liu D.Z.
      • Tian Y.
      • Ander B.P.
      • Xu H.
      • Stamova B.S.
      • Zhan X.
      • Turner R.J.
      • Jickling G.
      • Sharp F.R.
      Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
      who studied whole hippocampal miRNAs after systemic KA-induced seizures in rats at 24 hours, reveals no miRNAs overlapping with those reported here. We did detect some of the same miRNAs up-regulated in the study by Hu et al,
      • Hu K.
      • Zhang C.
      • Long L.
      • Long X.
      • Feng L.
      • Li Y.
      • Xiao B.
      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      who profiled rats after pilocarpine-induced status epilepticus, including miR-132, miR-375, and miR-199a. These could be common seizure-regulated miRNAs. Indeed, these miRNAs were either down-regulated or unchanged after ischemia and subarachnoid hemorrhage.
      • Lusardi T.A.
      • Farr C.D.
      • Faulkner C.L.
      • Pignataro G.
      • Yang T.
      • Lan J.
      • Simon R.P.
      • Saugstad J.A.
      Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
      • Liu D.Z.
      • Tian Y.
      • Ander B.P.
      • Xu H.
      • Stamova B.S.
      • Zhan X.
      • Turner R.J.
      • Jickling G.
      • Sharp F.R.
      Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
      Again, several miRNAs down-regulated in the study by Hu et al
      • Hu K.
      • Zhang C.
      • Long L.
      • Long X.
      • Feng L.
      • Li Y.
      • Xiao B.
      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      were either unchanged in the present study (miR-181c) or showed an opposite expression pattern (miR-29a, miR-10b, and miR-21). The present study provides a clean data set on CA3 subfield responses, one that can serve as a resource to identify a common miRNA signature among models of status epilepticus. Other strengths of the present study are the use of saline-perfused animals, which avoids potential contamination of blood miRNA in brain tissue samples.
      • Liu D.Z.
      • Tian Y.
      • Ander B.P.
      • Xu H.
      • Stamova B.S.
      • Zhan X.
      • Turner R.J.
      • Jickling G.
      • Sharp F.R.
      Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
      • Hu K.
      • Zhang C.
      • Long L.
      • Long X.
      • Feng L.
      • Li Y.
      • Xiao B.
      Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
      Our qPCR-based approach offers technical advantages over microarray-based profiling in terms of greater sensitivity and specificity, and in detecting only the biologically active mature form of the miRNA.
      In summary, in the present study we have characterized the mouse miRNA response in the CA3 subfield after status epilepticus evoked by intra-amygdalar KA and have shown how this is altered in previously preconditioned animals. The observed shift toward miRNA down-regulation may be functionally important, and we show that targeting an injury-only up-regulated miRNA, miR-132, protected against seizure-induced neuronal death. These findings increase our understanding of the role of miRNAs in the pathogenesis of brain injury and the ability of a mild preceding seizure event to alter this response toward a state associated with tissue protection.

      Acknowledgment

      We thank Ronan Conroy for advice with statistical aspects of the work.

      Supplementary data

      • Supplemental Figure S1

        Relationship between seizure duration and seizure damage in antagomir studies. The relationship between seizure duration [high-amplitude, high-frequency discharges (HAHFDs) recorded in time between injection of kainic acid and termination by lorazepam] and hippocampal CA3 damage (FJB counts at the rostral level) was compared between scrambled antagomir (SCRAM) and miR-132 antagomir animals. Data were analyzed using Stata/SE release 11.2 (StataCorp, College Station, TX) for regression with robust variance estimation. An interaction term was used to test for a significant difference in slope in the relationship between seizure time and FJB counts. Because an outlying value was present in the miR-132 antagomir FJB data, analysis was replicated using the mmregress command of Verardi and Croux.

        • Verardi V.
        • Croux C.
        Robust regression in Stata.
        MM regression
        • Yohai V.J.
        High breakdown point and high efficiency robust estimators for regression.
        combines a high degree of robustness to outliers with a high degree of statistical efficiency; the method has 70% of the efficiency of the standard OLS regression. The graph shows the significant correlation (r = 0.95, P = 0.046) between seizure duration and seizure damage in SCRAM mice after status epilepticus, confirming that seizure damage is closely associated with seizure duration in the model. In the miR-132 antagomir animals, the relationship between seizure duration and damage was disrupted (r = −0.59, P = 0.12). Comparison of regression slopes showed a significant interaction term (t = −3.4, P = 0.009). Use of MM regression confirmed that this difference was robust to the presence of the outlying value (P < 0.001 for comparison of slopes). Using hippocampal FJB data from the medial level produced similar results; that is, there was a correlation between seizure duration and damage in the SCRAM group (r = 0.91) and this was changed in miR-132 antagomir animals (r = −0.44). Although the slopes of the relationships differed between the miR-132 antagomir and SCRAM groups, the interaction term fell short of statistical significance (t = −2.05, P = 0.075).

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      • Corrections
        The American Journal of PathologyVol. 183Issue 1
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          In the article entitled “Risk Factors for Pancreatic Ductal Adenocarcinoma Specifically Stimulate Pancreatic Duct Glands in Mice” (Volume 182, pages 965–974 of the March 2013 issue of The American Journal of Pathology), the Abstract contained errors. Lines 11–12 should have read, “Both risk factors for pancreatic cancer also induced the production of Muc5ac and the nuclear localization of S100P.”
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        The American Journal of PathologyVol. 183Issue 2
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          Due to a production error, the wrong image was used in the July 2013 Corrections (Volume 183, pages 326–328 of the July 2013 issue) for Am J Pathol 2011 179:2519–2532 Figure 6E. The correct image appears below.
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