The brain possesses endogenous molecular mechanisms by which it can protect itself from harm, although forewarning is required to bring protection optimally to bear. Thus, mild noxious stressors such as brief ischemia or brief seizures evoke protective adaptations in the brain, which render it powerfully refractory against a subsequent and otherwise damaging insult.
1Cerebral preconditioning and ischaemic tolerance.
, 2- Dirnagl U.
- Becker K.
- Meisel A.
Preconditioning and tolerance against cerebral ischaemia: from experimental strategies to clinical use.
, 3- Jimenez-Mateos E.M.
- Henshall D.C.
Seizure preconditioning and epileptic tolerance: models and mechanisms.
The effect of the stressor has been termed preconditioning, and the protected state after the damaging insult is termed tolerance. Our understanding of the molecular processes underlying tolerance has been helped by microarray profiling. Such profiling has revealed large-scale, genomic reprogramming of the response to injury involving altered expression of hundreds of genes.
4Endogenous neuroprotective mechanisms in the brain.
, 5- Stenzel-Poore M.P.
- Stevens S.L.
- King J.S.
- Simon R.P.
Preconditioning reprograms the response to ischemic injury and primes the emergence of unique endogenous neuroprotective phenotypes: a speculative synthesis.
The prominent transcriptional response in tolerant brain is gene down-regulation.
6- Stenzel-Poore M.P.
- Stevens S.L.
- Xiong Z.
- Lessov N.S.
- Harrington C.A.
- Mori M.
- Meller R.
- Rosenzweig H.L.
- Tobar E.
- Shaw T.E.
- Chu X.
- Simon R.P.
Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states.
, 7- Koerner I.P.
- Gatting M.
- Noppens R.
- Kempski O.
- Brambrink A.M.
Induction of cerebral ischemic tolerance by erythromycin preconditioning reprograms the transcriptional response to ischemia and suppresses inflammation.
, 8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
In ischemic tolerance, the most affected processes are metabolism, transport, and inflammation,
6- Stenzel-Poore M.P.
- Stevens S.L.
- Xiong Z.
- Lessov N.S.
- Harrington C.A.
- Mori M.
- Meller R.
- Rosenzweig H.L.
- Tobar E.
- Shaw T.E.
- Chu X.
- Simon R.P.
Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states.
, 7- Koerner I.P.
- Gatting M.
- Noppens R.
- Kempski O.
- Brambrink A.M.
Induction of cerebral ischemic tolerance by erythromycin preconditioning reprograms the transcriptional response to ischemia and suppresses inflammation.
whereas the genes altered in epileptic tolerance encode ion channels, excitatory neurotransmitter receptors, and calcium signaling components.
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
The mechanism by which gene expression is altered in tolerance is unknown, but a contribution by microRNAs (miRNAs) has recently been proposed.
9Ischemic pre-conditioning alters cerebral microRNAs that are upstream to neuroprotective signaling pathways.
, 10- Lee S.T.
- Chu K.
- Jung K.H.
- Yoon H.J.
- Jeon D.
- Kang K.M.
- Park K.H.
- Bae E.K.
- Kim M.
- Lee S.K.
- Roh J.K.
MicroRNAs induced during ischemic preconditioning.
, 11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
The miRNAs are a family of small (∼22 nucleotides), endogenously expressed, noncoding RNAs that regulate mRNA translation by imperfect base-pairing interactions within the 3′ untranslated region (UTR).
12MicroRNAs: genomics, biogenesis, mechanism, and function.
Several hundred miRNAs have been identified in mammals, and miRNAs may be capable of regulating post-transcriptional expression of one-third or more of the protein-coding genes.
13- Lim L.P.
- Lau N.C.
- Garrett-Engele P.
- Grimson A.
- Schelter J.M.
- Castle J.
- Bartel D.P.
- Linsley P.S.
- Johnson J.M.
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs.
, 14- Baek D.
- Villen J.
- Shin C.
- Camargo F.D.
- Gygi S.P.
- Bartel D.P.
The impact of microRNAs on protein output.
, 15- Friedman R.C.
- Farh K.K.
- Burge C.B.
- Bartel D.P.
Most mammalian mRNAs are conserved targets of microRNAs.
Biogenesis begins with transcription by either RNA polymerase II or III to generate a pri-miRNA. Nuclear processing via Drosha, an RNase III endonuclease, produces a pre-miRNA that is then exported to the cytoplasm for processing by Dicer to the mature double-strand miRNA.
16- Krol J.
- Loedige I.
- Filipowicz W.
The widespread regulation of microRNA biogenesis, function and decay.
, 17- Kim V.N.
- Han J.
- Siomi M.C.
Biogenesis of small RNAs in animals.
One strand is then loaded into the RNA-induced silencing complex, which contains argonaute proteins and, depending on sequence complementarity, directs mRNA degradation or translational repression of the target mRNA.
18Argonaute proteins: mediators of RNA silencing.
Materials and Methods
Animal Model of Epileptic Tolerance
All animal experiments were performed in accordance with European Communities Council Directive 86/609/EEC and were reviewed and approved by the Research Ethics Committee of the Royal College of Surgeons in Ireland, under license from the Department of Health, Dublin, Ireland. Adult male C57BL/6 mice (20 to 22 g) from Harlan (Oxon, Bicester, UK) were used. Control mice received a single intraperitoneal injection of 0.2 mL saline on day 1 (sham preconditioning), followed by intra-amygdalar vehicle on day 2 (0.2 μL PBS). Injury group mice also received intraperitoneal injection of 0.2 mL saline on day 1, and then underwent status epilepticus induced by intra-amygdalar KA (Sigma-Aldrich, Dublin, Ireland; St. Louis, MO) on day 2. Tolerance mice underwent seizure preconditioning on day 1 via intraperitoneal injection of 0.2 mL KA (15 mg/kg), and then underwent status epilepticus on day 2 induced by intra-amygdalar KA.
Surgical Procedures
For intra-amygdalar injections, mice were anesthetized with isoflurane (5% induction, 1% to 2% maintenance) and placed in a mouse-adapted stereotaxic frame. Body temperature was maintained within the normal physiological range with a rectal thermometer and feedback-controlled heat pad (Harvard Apparatus, Kent, UK; Holliston, MA). After a midline scalp incision, the bregma was located and three partial craniectomies were performed for placement of skull-mounted recording screws (Bilaney Consultants, Sevenoaks, Kent, UK). A complete craniectomy was drilled for placement of a guide cannula for intra-amygdalar injections (coordinates from bregma: AP = −0.94 mm, L = −2.85 mm), based on a stereotaxic atlas.
33- Paxinos G.
- Franklin K.B.J.
The cannula and electrode assembly was fixed in place with dental cement and the animal was placed in a recording chamber. The electroencephalogram (EEG) was recorded using a Grass Comet XL laboratory-based EEG system (Grass Technologies, Slough, UK; West Warwick, RI). After baseline EEG recordings, the animal was lightly restrained while an injection cannula was lowered 3.75 mm below the brain surface for injection of KA (1 μg) or vehicle in a volume of 0.2 μL into the basolateral amygdala nucleus. After 40 minutes, all mice received lorazepam (Ativan; 6 mg/kg, i.p.). Animals were recorded for up to 1 hour thereafter, before being disconnected and placed in a warmed recovery chamber.
For intracerebroventricular injections, additional mice were affixed with a cannula ipsilateral to the site of KA injection, as described previously.
34- Murphy B.M.
- Engel T.
- Paucard A.
- Hatazaki S.
- Mouri G.
- Tanaka K.
- Tuffy L.P.
- Jimenez-Mateos E.M.
- Woods I.
- Dunleavy M.
- Bonner H.P.
- Meller R.
- Simon R.P.
- Strasser A.
- Prehn J.H.
- Henshall D.C.
Contrasting patterns of Bim induction and neuroprotection in Bim-deficient mice between hippocampus and neocortex after status epilepticus.
Coordinates from the bregma were AP = −0.3 mm, L = −1.0 mm, V = −2.0 mm. Mice received 2 μL infusion of either scrambled or miR-132 antagomir (locked nucleic acid LNA- and 3′-cholesterol-modified oligonucleotides; Exiqon, Vedbaek, Denmark) in artificial cerebrospinal fluid (Harvard Apparatus). Twenty-four hours later, mice were either euthanized or were subjected to status epilepticus, as described above.
Mice were euthanized at 24 hours after intra-amygdalar injections. Animals were given a pentobarbital overdose and were perfused with ice-cold saline to remove intravascular blood components. Brains for molecular and biochemical work were dissected on dry ice under a microscope and the hippocampus was subdivided to obtain the separate CA3-enriched portion, as described previously.
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
For histology, mice were first perfused with ice-cold saline and then either perfusion-fixed with paraformaldehyde (4%) or brains were fresh-frozen in 2-methylbutane at −30°C.
Electroencephalography Analysis
EEGs were analyzed using TWin software v3.8 (Grass Technologies), and the duration of high-amplitude, high-frequency discharges (also termed type IV seizures) was calculated between the time of KA injection and the time of lorazepam administration.
35- Engel T.
- Hatazaki S.
- Tanaka K.
- Prehn J.H.
- Henshall D.C.
Deletion of Puma protects hippocampal neurons in a model of severe status epilepticus.
Additional frequency and amplitude analysis of EEG was performed using LabChart Pro version 7 software (ADInstruments, Oxford, UK).
miRNA Extraction and Expression Profiling of Pooled miRNAs
Total mRNA was extracted using an miRNeasy kit (Qiagen, West Sussex, UK; Valencia, CA) according to the manufacturer's instructions to obtain an enrichment of small RNAs. For each condition, ipsilateral CA3 subfields from three separate mice were pooled together for analysis, and this was repeated using independent samples. Quality and quantity of mRNA was measured using a NanoDrop spectrophotometer (Thermo Scientific, Loughborough, UK; Wilmington, DE), and RNA dilutions were made up in nuclease-free water. Reverse transcription of 250 ng of miRNA from the CA3 subfields from each condition was performed using stem-loop multiplex primer pools (Applied Biosystems, Paisley, UK; Foster City, CA), allowing reverse transcription of 48 different miRNAs in each of eight RT pools. The miRNA quantitative PCR (qPCR) screen was performed on the 7900HT fast real-time system using TaqMan low-density arrays (TaqMan TLDA MicroRNA assays version 1.0 containing 380 human microRNAs assays; Applied Biosystems). Of the profiled human miRNAs, 197 were 100% homologous to mouse. miRNAs were considered differentially expressed at a threshold of ±1.5-fold.
36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
Stem-Loop Reverse Transcription and Real-Time qPCR of Individual miRNAs
Reverse transcription for individual qPCRs was performed using 250 ng of total RNA and a high-capacity reverse transcription kit (Applied Biosystems); RT-specific primers for mouse miRNAs miR-27a, miR-92a, miR-101, miR-127, miR-132, miR-145, miR-200a, and miR-326 (Applied Biosystems) were used for all miRNA reverse transcription. Individual qPCRs were performed on the 7900HT fast real-time system (Applied Biosystems) using miR-27a, miR-92a, miR-101, miR-127, miR-132, miR-145, miR-200a, and miR326-specific TaqMan microRNA assays (Applied Biosystems). RNU19 was used for normalization miRNA expression studies, as described previously.
37- Shibata M.
- Nakao H.
- Kiyonari H.
- Abe T.
- Aizawa S.
MicroRNA-9 regulates neurogenesis in mouse telencephalon by targeting multiple transcription factors.
A relative fold change in expression of the target gene transcript was determined using the comparative cycle threshold method (2
−ΔΔCT).
Western Blotting
Western blot analysis was performed as described previously.
38- Engel T.
- Murphy B.M.
- Hatazaki S.
- Jimenez-Mateos E.M.
- Concannon C.G.
- Woods I.
- Prehn J.H.
- Henshall D.C.
Reduced hippocampal damage and epileptic seizures after status epilepticus in mice lacking proapoptotic Puma.
Hippocampal CA3 subfields were homogenized in a lysis buffer, boiled in gel-loading buffer, separated on SDS-PAGE gels, and transferred onto nitrocellulose membranes. The following primary antibodies were used: Drosha (1:400; Cell Signaling Technology, Danvers, MA), Dicer-1 (1:400; Santa Cruz Biotechnology, Santa Cruz, CA), Argonaute-2 (Ago-2) (1:400; Cell Signaling Technology), and Tubulin (1:2000, Sigma-Aldrich). Membranes were then incubated with horseradish peroxidase-conjugated secondary antibodies (Jackson ImmunoResearch, West Grove, PA) and bands were visualized using Pierce SuperSignal West Pico chemiluminescence substrate (Thermo Fisher Scientific, Rockford, IL). Images were captured using a Fuji-Film LAS-300 (Fuji, Sheffield, UK), and densitometry was performed using AlphaEaseFC4.0 gel-scanning integrated optical density software (Alpha Innotech; ProteinSimple, San Leandro, CA).
Immunoprecipitation of Argonaute-2 (Ago-2)
Pools of three individual mouse CA3 subfields from each condition were homogenized in 0.7 mL of ice-cold immunoprecipitation buffer (300 mmol/L NaCl, 5 mmol/L MgCl2, 0.1% NP-40, 50 mmol/L Tris-HCl pH 7.5). The homogenate was centrifuged at 16,000 × g for 15 minutes at 4°C and the supernatant was considered as the total cell lysate. Five micrograms of anti-Ago-2 was added to each 400 μg of supernatant in a final volume of 1 mL. The solution was vortex-mixed and incubated overnight at 4°C. After addition of 20 μL of 50% protein-A/G-agarose beads (Santa Cruz Biotechnology), the solution was mixed and incubated for 1 hour at 4°C. The beads were centrifuged at 16,000 × g for 15 minutes at 4°C, and the supernatant was removed. The pellet was washed twice with immunoprecipitation buffer, and miRNA was extracted using an miRNeasy kit (Qiagen, West Sussex, UK). Stem-loop reverse transcription and real-time qPCR (Applied Biosystems) was performed as described above to semiquantify the expression of the miRNA.
Histopathology
To characterize seizure-damage in the model, brains from control, injury, and tolerance mice were sectioned at 12 μm on a cryostat (−20°C) at the level of either rostral (AP = −1.58 mm) or medial (AP = −1.82 mm) hippocampus.
33- Paxinos G.
- Franklin K.B.J.
Fluoro-Jade B (FJB) staining was performed as described previously.
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
, 39- Jimenez-Mateos E.M.
- Mouri G.
- Conroy R.M.
- Henshall D.C.
Epileptic tolerance is associated with enduring neuroprotection and uncoupling of the relationship between CA3 damage, neuropeptide Y rearrangement and spontaneous seizures following intra-amygdalar kainic acid-induced status epilepticus in mice.
Briefly, tissue sections were allowed to air-dry and then were postfixed in formalin (10%), immersed in 0.006% potassium permanganate solution, rinsed again, and then transferred to FJB solution (0.001% in 0.1% acetic acid) (Millipore-Chemicon Europe, Chandlers Ford, UK; Billerica, MA). Sections were then rinsed again, dried, cleared, and mounted in DPX mounting medium (Sigma-Aldrich). Analysis of DNA damage was performed on fresh-frozen sections using a fluorescein-based TUNEL technique, according to the manufacturer's instructions (Promega, Madison, WI) and as described previously.
38- Engel T.
- Murphy B.M.
- Hatazaki S.
- Jimenez-Mateos E.M.
- Concannon C.G.
- Woods I.
- Prehn J.H.
- Henshall D.C.
Reduced hippocampal damage and epileptic seizures after status epilepticus in mice lacking proapoptotic Puma.
For assessment of neuron loss, sections were fixed, blocked in 5% goat serum, and incubated with antibodies against neuronal nuclear protein (1:500 NeuN; Millipore Ireland, Tullagreen, Cork, Ireland), which was detected using goat anti-mouse Alexa Fluor 568 (Bio-Sciences, Dun Laoghaire, Ireland). Sections were examined using a Nikon 2000s epifluorescence microscope (Micron Optical, Enniscorthy, Ireland) under excitation/emission (Ex/Em) wavelengths of 472/520 nm (green) and 540 to 580/600 to 660 nm (red). Pseudocolor transforms from monochromatic images acquired using an Orca-285 digital camera (Hamamatsu Photonics, Hamamatsu City, Japan) were generated using Adobe Photoshop version 6.0 software. Cell counts were performed for the entire CA3 subfield, beginning at the border with CA2 through to the end of CA3c/CA4 within the hilus of the dentate gyrus. Counts of FJB-, TUNEL- and NeuN-stained cells were the average of two adjacent sections assessed by an observer blinded to experimental group and condition.
In Situ Hybridization
For in situ hybridization, mice (n = 3) were perfused with ice-cold PBS followed by paraformaldehyde (4%). Sections (12 μm thick) were mounted on SuperFrost-Plus slides (VWR International, Radnor, PA) and air dried. Using RNase free solutions, slides were washed with PBS and radioimmunoprecipitation assay buffer [150 mL NaCl, 1% (octylphenoxy)polyethoxyethanol (IGEPAL)], 0.5% sodium deoxycholate, 0.1% SDS, 1 mmol/L EDTA, 50 mmol/L Tris pH 8.0) for 5 minutes, then treated with 4% paraformaldehyde for 10 minutes. Sections were washed again and treated with 0.25% acetic anhydride/0.1 mol/L triethanolamine, then rinsed with 0.1% Tween-20/PBS for 5 minutes, treated with 5 μg/mL proteinase K for 4 minutes, and washed with PBS. Next, slides were rinsed in prehybridization buffer (1× saline solution, 50% formamide, and 1× Denhardt's solution) for 1 hour at 56°C (melting temperature Tm = −20°C, as specified by Exiqon). The probe to detect mi-132 was 5′-digoxigenin-labeled, 2′-O,4′-C-methylene bicyclonucleoside monomer-containing oligonucleotide (LNA-modified). The sequence was the reverse complement to the mature miRNA. Probes were incubated 1:200 in hybridization buffer (1× saline solution, 50% formamide, and 1× Denhardt's plus 10% dextran sulfate) overnight at 56°C in a humidified chamber. On the next day, sections were washed in FAM buffer (2× SSC, 50% formamide, and 0.1% Tween 20) for 1 hour at 60°C. Then sections were rinsed in B1 buffer (150 mmol/L NaCl, 100 mmol/L maleic acid, and 0.4% IGEPAL pH, 7.5) for 1 hour at room temperature and in B2 buffer (2% blocking reagent and 10% goat serum in B1 buffer) for 30 minutes. Anti-DIG-PA antibody (1:1000; Roche Applied Science, Indianapolis, IN) was incubated in B2 buffer overnight at 4°C. On the next day, sections were washed in B1 buffer and incubated in B3 buffer (100 mmol/L NaCl, 50 mmol/L MgCl2, 0.025% Tween 20 and 100 mmol/L Trizma pH9.5) for 30 minutes. Then, 200 μL of color substrate solution [nitroblue tetrazolium/5-bromo-4-chloro-3-indolyl phosphate (BNT/BCIP stock solution; Roche Applied Science)] diluted 1:50 in B3 buffer was added to each slide until the signal appeared. Slides were then rinsed, mounted, and coverslipped.
Statistical Analysis
All data are presented as means ± SEM. Two-group comparisons were made using Student's t-test; multigroup comparisons were made using analysis of variance followed by appropriate post hoc testing. Significance was set at P < 0.05.
Discussion
In the present study, we characterized the transcriptional response of mature miRNAs to status epilepticus evoked by intra-amygdalar KA and showed this to be altered in the hippocampus of tolerant mice (ie, preconditioned animals). Compared with status epilepticus alone, miRNA expression responses in tolerance were often reduced or were regulated in the opposite direction. We also showed that in vivo depletion of miR-132, one of the differentially up-regulated miRNAs in injury, reduced neuronal death after status epilepticus. These findings contribute to our understanding of the molecular mechanisms of tolerance and support miRNAs as novel determinants of seizure-induced neuronal death.
From initial work on single metabolites and genes,
48- Heurteaux C.
- Lauritzen I.
- Widmann C.
- Lazdunski M.
Essential role of adenosine, adenosine A1 receptors, and ATP-sensitive K+ channels in cerebral ischemic preconditioning.
, 49- Chen J.
- Graham S.H.
- Zhu R.L.
- Simon R.P.
Stress proteins and tolerance to focal cerebral ischemia.
, 50- Shimizu S.
- Nagayama T.
- Jin K.L.
- Zhu L.
- Loeffert J.E.
- Watkins S.C.
- Graham S.H.
- Simon R.P.
bcl-2 Antisense treatment prevents induction of tolerance to focal ischemia in the rat brain.
, 51- McLaughlin B.
- Hartnett K.A.
- Erhardt J.A.
- Legos J.J.
- White R.F.
- Barone F.C.
- Aizenman E.
Caspase 3 activation is essential for neuroprotection in preconditioning.
an appreciation has emerged that tolerance is associated with large-scale, genomic reprogramming that involves altered expression of hundreds of genes.
4Endogenous neuroprotective mechanisms in the brain.
, 5- Stenzel-Poore M.P.
- Stevens S.L.
- King J.S.
- Simon R.P.
Preconditioning reprograms the response to ischemic injury and primes the emergence of unique endogenous neuroprotective phenotypes: a speculative synthesis.
, 7- Koerner I.P.
- Gatting M.
- Noppens R.
- Kempski O.
- Brambrink A.M.
Induction of cerebral ischemic tolerance by erythromycin preconditioning reprograms the transcriptional response to ischemia and suppresses inflammation.
The present study builds on our understanding of the molecular processes that underlie epileptic tolerance and introduces an important new contributor, namely, miRNAs. Previously, microarray analyses showed that the response of protein-coding genes in the CA3 subfield of the hippocampus to status epilepticus is profoundly altered in animals previously preconditioned by brief seizures, with widespread down-regulation, particularly of genes implicated in excitotoxicity.
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
Our present results show that status epilepticus also produces profound changes in the expression of miRNAs. Expression of more than half the detected mature miRNAs increased in the hippocampus in the injury group, indicating major transcriptional regulation of miRNAs. Because miRNAs are capable of regulating large numbers of mRNA transcripts, our data support other recent work
36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
, 52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
suggesting that miRNAs contribute to the gene expression environment of status epilepticus.
Although the mechanism by which miRNAs function differs from RNA interference, miRNAs have nevertheless been reported to directly reduce mRNA levels in cells.
53- Guo H.
- Ingolia N.T.
- Weissman J.S.
- Bartel D.P.
Mammalian microRNAs predominantly act to decrease target mRNA levels.
Given that mRNAs for hundreds of protein-coding genes are reduced in epileptic tolerance relative to status epilepticus alone,
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
one prediction for the present study would have been to see greatly increased miRNA expression in tolerant animals. This was not found, however. Instead, the differential miRNA regulation in epileptic tolerance was mainly a block of the up-regulation of miRNAs after status epilepticus in combination with down-regulation of a set of miRNAs not ordinarily regulated after status epilepticus alone. Thus, the miRNA transcriptome of epileptic tolerance is most characterized by a suppression of the normal regulated responses of miRNAs after status epilepticus.
Our immunoblotting results suggest that changes to miRNA biogenesis components are not responsible for the miRNA profile in epileptic tolerance. A necessary next step is to identify the mRNA targets targeted by miRNA changes in tolerance. This is not straightforward, and it is generally inappropriate to use exclusively bioinformatics tools predicting mRNA targets of miRNAs to identify the pathways affected and assert functional consequences, as has been reported,
52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
without direct experimental validation that a particular miRNA can target an mRNA and alter translation.
31MicroRNAs as effectors of brain function with roles in ischemia and injury, neuroprotection, and neurodegeneration.
The identification and experimental validation of the mRNA targets of the tolerance-regulated miRNAs will enable full evaluation of their potential as effectors of the neuroprotection.
How does the profile in epileptic tolerance compare to that of ischemic tolerance? Reduction of miRNA regulation is found after stroke in ischemic preconditioned mice,
11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
whereas differential up-regulation of miRNAs, reported to be instigated by ischemic preconditioning,
9Ischemic pre-conditioning alters cerebral microRNAs that are upstream to neuroprotective signaling pathways.
, 10- Lee S.T.
- Chu K.
- Jung K.H.
- Yoon H.J.
- Jeon D.
- Kang K.M.
- Park K.H.
- Bae E.K.
- Kim M.
- Lee S.K.
- Roh J.K.
MicroRNAs induced during ischemic preconditioning.
, 11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
was not a feature of epileptic tolerance. Does a set of miRNAs appear in common across these different models of tolerance? This might be expected, because there is crossover between categories of genes in ischemic and epileptic tolerance, including transport genes.
6- Stenzel-Poore M.P.
- Stevens S.L.
- Xiong Z.
- Lessov N.S.
- Harrington C.A.
- Mori M.
- Meller R.
- Rosenzweig H.L.
- Tobar E.
- Shaw T.E.
- Chu X.
- Simon R.P.
Effect of ischaemic preconditioning on genomic response to cerebral ischaemia: similarity to neuroprotective strategies in hibernation and hypoxia-tolerant states.
, 8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
There are miRNAs down-regulated in both epileptic tolerance and ischemic tolerance, including miR-330 and miR-497. However, these are also down-regulated after status epilepticus alone, suggesting that they could not as such account for tolerance. In fact, only miR-27a appears to be regulated in the same direction in both epileptic and ischemic tolerance, with the direction opposite from its response to injury (Lusardi et al
11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
and present study). However, the absence of changes in RNA-induced silencing complex uptake of miR-27a during Ago-2 analysis casts doubt on a functional influence.
It is notable that some of the mRNA and protein changes inducing the neuroprotection seen in tolerance are similar to the alterations that enable cells to evade apoptosis in cancer, such as increased Bcl-2 and polycomb group protein levels.
50- Shimizu S.
- Nagayama T.
- Jin K.L.
- Zhu L.
- Loeffert J.E.
- Watkins S.C.
- Graham S.H.
- Simon R.P.
bcl-2 Antisense treatment prevents induction of tolerance to focal ischemia in the rat brain.
, 54- Stapels M.
- Piper C.
- Yang T.
- Li M.
- Stowell C.
- Xiong Z.G.
- Saugstad J.
- Simon R.P.
- Geromanos S.
- Langridge J.
- Lan J.Q.
- Zhou A.
Polycomb group proteins as epigenetic mediators of neuroprotection in ischemic tolerance.
, 55Throwing the cancer switch: reciprocal roles of polycomb and trithorax proteins.
It is tempting to draw parallels again between the miRNA changes that characterize tolerance and the frequent, global down-regulation of miRNAs and their biogenesis machinery in many tumors.
56MicroRNA signatures in human cancers.
The present study also provides
in vivo evidence that modulation of a seizure-regulated miRNA can influence neuropathologic outcome after status epilepticus. miR-132 has previously been reported to be expressed in mouse hippocampus,
26- Edbauer D.
- Neilson J.R.
- Foster K.A.
- Wang C.F.
- Seeburg D.P.
- Batterton M.N.
- Tada T.
- Dolan B.M.
- Sharp P.A.
- Sheng M.
Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132 [Erratum appeared in Neuron 2010, 68:161].
, 29- Konopka W.
- Kiryk A.
- Novak M.
- Herwerth M.
- Parkitna J.R.
- Wawrzyniak M.
- Kowarsch A.
- Michaluk P.
- Dzwonek J.
- Arnsperger T.
- Wilczynski G.
- Merkenschlager M.
- Theis F.J.
- Kohr G.
- Kaczmarek L.
- Schutz G.
MicroRNA loss enhances learning and memory in mice.
which we also confirmed in the present study using both PCR and
in situ hybridization. We used antagomirs to reduce hippocampal miR-132 levels, thereby modeling the tolerance-induced miR-132 profile. Antagomirs are known to function by complementary binding that leads to non-RNAi-mediated degradation of the miRNA.
43- Krützfeldt J.
- Kuwajima S.
- Braich R.
- Rajeev K.G.
- Pena J.
- Tuschl T.
- Manoharan M.
- Stoffel M.
Specificity, duplex degradation and subcellular localization of antagomirs.
Our present experiments showed that antagomirs targeting miR-132 profoundly reduce neuronal death within the CA3 sector after seizures. The mechanism of this protection is as yet unknown. Known targets of miR-132 include p250 GTPase-activating protein,
23- Vo N.
- Klein M.E.
- Varlamova O.
- Keller D.M.
- Yamamoto T.
- Goodman R.H.
- Impey S.
A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis [Erratum appeared in Proc Natl Acad Sci USA 2006, 103:825].
and miR-132 can promote dendritic growth and arborization in response to neuronal activity
57- Wayman G.A.
- Davare M.
- Ando H.
- Fortin D.
- Varlamova O.
- Cheng H.Y.
- Marks D.
- Obrietan K.
- Soderling T.R.
- Goodman R.H.
- Impey S.
An activity-regulated microRNA controls dendritic plasticity by down-regulating p250GAP.
and spine morphogenesis.
26- Edbauer D.
- Neilson J.R.
- Foster K.A.
- Wang C.F.
- Seeburg D.P.
- Batterton M.N.
- Tada T.
- Dolan B.M.
- Sharp P.A.
- Sheng M.
Regulation of synaptic structure and function by FMRP-associated microRNAs miR-125b and miR-132 [Erratum appeared in Neuron 2010, 68:161].
A small effect of the antagomirs on seizure duration was noted, although the present and previous
58- Murphy B.
- Dunleavy M.
- Shinoda S.
- Schindler C.
- Meller R.
- Bellver-Estelles C.
- Hatazaki S.
- Dicker P.
- Yamamoto A.
- Koegel I.
- Chu X.
- Wang W.
- Xiong Z.
- Prehn J.
- Simon R.
- Henshall D.
Bcl-w protects hippocampus during experimental status epilepticus.
analyses of the statistical relationship between seizure time and damage in the model argue against this accounting for the neuroprotection. More likely, the neuroprotection relates to changes in cell death signaling pathways, rather than altered seizure severity. Of note, at least 5 of the 21 protein-coding genes differentially down-regulated in injury in our previous microarray screen
8- Jimenez-Mateos E.M.
- Hatazaki S.
- Johnson M.B.
- Bellver-Estelles C.
- Mouri G.
- Bonner C.
- Prehn J.H.
- Meller R.
- Simon R.P.
- Henshall D.C.
Hippocampal transcriptome after status epilepticus in mice rendered seizure damage-tolerant by epileptic preconditioning features suppressed calcium and neuronal excitability pathways.
have predicted miR-132 binding sites within their 3′UTR (
Adrbk2,
Grm7,
Ntng1,
Slc40a1 and
Vgll3; D.H. and R.S., unpublished observations). The present study also reveals an unexpected effect of higher doses of the scrambled antagomir reducing miRNA levels of both miR-132 and the unrelated miR-92a. This observation, which may be due to off-target effects, underscores the need for full dose-response evaluation of supposedly inactive scrambled antagomirs.
Increased expression of miR-132 after status epilepticus alone was also reported after pilocarpine-induced seizures, in a CREB-dependent manner.
21- Nudelman A.S.
- DiRocco D.P.
- Lambert T.J.
- Garelick M.G.
- Le J.
- Nathanson N.M.
- Storm D.R.
Neuronal activity rapidly induces transcription of the CREB-regulated microRNA-132, in vivo.
Thus, findings on this particular miRNA using the intra-amygdalar KA model can be extrapolated to other seizure models. Our data show, however, that miR-132 was not induced in the CA3 subfield in tolerance mice, nor in the CA1 that is uninjured after status epilepticus alone. Transcriptional control of miR-132 can therefore be dissociated from strong neuronal activity. Moreover, because down-regulation of miR-132 has been implicated in ischemic tolerance by enabling MECP2 protein translation,
11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
and because CREB has been implicated as an effector of ischemic tolerance,
59- Hara T.
- Hamada J.
- Yano S.
- Morioka M.
- Kai Y.
- Ushio Y.
CREB is required for acquisition of ischemic tolerance in gerbil hippocampal CA1 region.
, 60- Meller R.
- Minami M.
- Cameron J.A.
- Impey S.
- Chen D.
- Lan J.Q.
- Henshall D.C.
- Simon R.P.
CREB-mediated Bcl-2 protein expression after ischemic preconditioning.
our data identify a mechanistic difference between ischemic and epileptic tolerance. We also note that miR-132 can have an anti-inflammatory role by targeting acetylcholinesterase.
61- Shaked I.
- Meerson A.
- Wolf Y.
- Avni R.
- Greenberg D.
- Gilboa-Geffen A.
- Soreq H.
MicroRNA-132 potentiates cholinergic anti-inflammatory signaling by targeting acetylcholinesterase.
Because inflammation and blood-brain barrier opening have been implicated in ictogenesis and epileptogenesis,
62- Vezzani A.
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The role of inflammation in epilepsy.
we cannot exclude possible favorable effects of elevated miR-132 levels in other seizure models.
Two recent studies have profiled miRNA transcriptional responses after experimental status epilepticus, but in each case miRNA was obtained from the entire hippocampus.
36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
, 52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
This limits interpretation, because of the well-established transcriptional heterogeneity among hippocampal subfields.
40- Lein E.S.
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- Gage F.H.
Defining a molecular atlas of the hippocampus using DNA microarrays and high-throughput in situ hybridization.
, 63- Greene J.G.
- Borges K.
- Dingledine R.
Quantitative transcriptional neuroanatomy of the rat hippocampus: evidence for wide-ranging, pathway-specific heterogeneity among three principal cell layers.
Indeed, we show that an individual miRNA can display large intersubfield expressional differences in the same model (
Figure 5B). It is perhaps not surprising, therefore, that comparison with the findings of Liu et al,
36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
who studied whole hippocampal miRNAs after systemic KA-induced seizures in rats at 24 hours, reveals no miRNAs overlapping with those reported here. We did detect some of the same miRNAs up-regulated in the study by Hu et al,
52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
who profiled rats after pilocarpine-induced status epilepticus, including miR-132, miR-375, and miR-199a. These could be common seizure-regulated miRNAs. Indeed, these miRNAs were either down-regulated or unchanged after ischemia and subarachnoid hemorrhage.
11- Lusardi T.A.
- Farr C.D.
- Faulkner C.L.
- Pignataro G.
- Yang T.
- Lan J.
- Simon R.P.
- Saugstad J.A.
Ischemic preconditioning regulates expression of microRNAs and a predicted target, MeCP2, in mouse cortex.
, 36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
Again, several miRNAs down-regulated in the study by Hu et al
52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
were either unchanged in the present study (miR-181c) or showed an opposite expression pattern (miR-29a, miR-10b, and miR-21). The present study provides a clean data set on CA3 subfield responses, one that can serve as a resource to identify a common miRNA signature among models of status epilepticus. Other strengths of the present study are the use of saline-perfused animals, which avoids potential contamination of blood miRNA in brain tissue samples.
36- Liu D.Z.
- Tian Y.
- Ander B.P.
- Xu H.
- Stamova B.S.
- Zhan X.
- Turner R.J.
- Jickling G.
- Sharp F.R.
Brain and blood microRNA expression profiling of ischemic stroke, intracerebral hemorrhage, and kainate seizures.
, 52- Hu K.
- Zhang C.
- Long L.
- Long X.
- Feng L.
- Li Y.
- Xiao B.
Expression profile of microRNAs in rat hippocampus following lithium-pilocarpine-induced status epilepticus.
Our qPCR-based approach offers technical advantages over microarray-based profiling in terms of greater sensitivity and specificity, and in detecting only the biologically active mature form of the miRNA.
In summary, in the present study we have characterized the mouse miRNA response in the CA3 subfield after status epilepticus evoked by intra-amygdalar KA and have shown how this is altered in previously preconditioned animals. The observed shift toward miRNA down-regulation may be functionally important, and we show that targeting an injury-only up-regulated miRNA, miR-132, protected against seizure-induced neuronal death. These findings increase our understanding of the role of miRNAs in the pathogenesis of brain injury and the ability of a mild preceding seizure event to alter this response toward a state associated with tissue protection.
Article info
Publication history
Published online: September 26, 2011
Accepted:
July 12,
2011
Footnotes
Supported by Science Foundation Ireland grant 08/IN1/B1875 (D.C.H.), Health Research Board grant PHD/2007/11, a postdoctoral fellowship from the Irish Research Council for Science Engineering and Technology (E.J.-M.), the National Biophotonics and Imaging Platform Ireland, and the Children's Medical and Research Foundation.
Supplemental material for this article can be found at http://ajp.amjpathol.org or at doi: 10.1016/j.ajpath.2011.07.036.
Copyright
© 2011 American Society for Investigative Pathology. Published by Elsevier Inc.