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Regular article Tumorigenesis and neoplastic progression| Volume 181, ISSUE 4, P1436-1442, October 2012

Measurement of Aldehyde Dehydrogenase 1 Expression Defines a Group with Better Prognosis in Patients with Non-Small Cell Lung Cancer

Open ArchivePublished:August 08, 2012DOI:https://doi.org/10.1016/j.ajpath.2012.06.037
      Aldehyde dehydrogenase 1 (ALDH1) has been suggested as a surrogate biomarker for cancer stem cells in breast cancer and other tumors. We quantitatively measured ALDH1 in two large cohorts of patients with non-small cell lung cancer (NSCLC) and investigated its prognostic value. The AQUA method of quantitative immunofluorescence was used to measure ALDH1 in 134 patients with NSCLC from Yale University and 296 patients with NSCLC from Sotiria and Patras University hospitals in Greece, using tissue microarrays. Patients were classified as positive or negative for ALDH1 based on the detection threshold for quantitative immunofluorescence. Patients with squamous cell carcinoma had higher scores than patients with adenocarcinoma. Detectable ALDH1 predicted better prognosis in both cohorts (P = 0.0035 for the Yale cohort; P = 0.0238 for the Sotiria/Patras cohorts). The effect of ALDH1 expression was independent of clinicopathologic factors in the Yale cohort (risk ratio = 3.2, P = 0.0008), but did not reach significance in the Sotiria/Patras cohort (hazard ratio = 1.51, P = 0.08). Among patients with adenocarcinoma, the ALDH1-negative group had shorter survival compared with the ALDH1-positive group in the Yale cohort (P = 0.00001), but not in the Sotiria/Patras cohort (P = 0.45). Unlike breast cancer, in which ALDH1 expression predicts poor outcome, in NSCLC our exploratory and retrospective study indicates that ALDH1 expression is associated with favorable outcome.
      Non-small cell lung cancer (NSCLC) is the leading cause of cancer-related death worldwide.
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      Global cancer statistics [Erratum appeared in CA Cancer J Clin 2011, 61:134].
      To date, tumor stage is the most informative baseline information that defines prognosis and aids treatment decisions. The prognostic potential of histology type, age, sex, and other traditional patient characteristics has been recognized in several reports, but is limited.
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      Gender, histology, and time of diagnosis are important factors for prognosis: analysis of 1499 never-smokers with advanced non-small cell lung cancer in Japan.
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      Prognostic factors for survival of stage I nonsmall cell lung cancer patients: a population-based analysis of 19,702 stage I patients in the California Cancer Registry from 1989 to 2003.
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      Japanese Joint Committee for Lung Cancer Registration
      Survival differences by gender for resected non-small cell lung cancer: a retrospective analysis of 12,509 cases in a Japanese Lung Cancer Registry study.
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      International Staging Committee and Participating Institutions
      The impact of additional prognostic factors on survival and their relationship with the anatomical extent of disease expressed by the 6th edition of the TNM Classification of Malignant Tumors and the proposals for the 7th Edition.
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      Never-smoking nonsmall cell lung cancer as a separate entity: clinicopathologic features and survival.
      On the other hand, an increasing body of literature indicates molecular biomarkers as determinants of prognosis, thus pointing to the importance and feasibility of classifying patients with NSCLC according to unique molecular profiles.
      Aldehyde dehydrogenase (ALDH) belongs to a family of detoxifying enzymes that convert aldehydes to their corresponding carboxylic acids.
      • Vasiliou V.
      • Nebert D.W.
      Analysis and update of the human aldehyde dehydrogenase (ALDH) gene family.
      • Yoshida A.
      • Rzhetsky A.
      • Hsu L.C.
      • Chang C.
      Human aldehyde dehydrogenase gene family.
      Members of this family are present in many types of normal tissues. ALDH1 has been suggested as a surrogate biomarker for hematopoietic stem cells.
      • Hess D.A.
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      • Craft T.P.
      • Herrbrich P.E.
      • Creer M.H.
      • Nolta J.A.
      Functional characterization of highly purified human hematopoietic repopulating cells isolated according to aldehyde dehydrogenase activity.
      In addition, ALDH1 is a variant reported to be enriched in cells with stem cell properties in several types of malignancies.
      • Douville J.
      • Beaulieu R.
      • Balicki D.
      ALDH1 as a functional marker of cancer stem and progenitor cells.
      In this context, ALDH1-positive cells demonstrate asymmetrical differentiation and tumor-initiating capacity in breast cancers,
      • Ginestier C.
      • Hur M.H.
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      • Schott A.
      • Hayes D.
      • Birnbaum D.
      • Wicha M.S.
      • Dontu G.
      ALDH1 is a marker of normal and malignant human mammary stem cells and a predictor of poor clinical outcome.
      and ALDH1 positivity predicts worse prognosis and resistance to chemotherapy in those tumors.
      • Charafe-Jauffret E.
      • Ginestier C.
      • Iovino F.
      • Tarpin C.
      • Diebel M.
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      • Extra J.M.
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      • Dontu G.
      • Stassi G.
      • Xiao Y.
      • Barsky S.H.
      • Birnbaum D.
      • Viens P.
      • Wicha M.S.
      Aldehyde dehydrogenase 1-positive cancer stem cells mediate metastasis and poor clinical outcome in inflammatory breast cancer.
      Nevertheless, it is controversial whether a single marker can serve as an adequate surrogate for cancer stem cell detection.
      • Neumeister V.
      • Rimm D.
      Is ALDH1 a good method for definition of breast cancer stem cells?.
      There is evidence to suggest that the combination of ALDH1 and CD44 defines the population of cancer-initiating cells more adequately than either protein alone.
      • Neumeister V.
      • Agarwal S.
      • Bordeaux J.
      • Camp R.L.
      • Rimm D.L.
      In situ identification of putative cancer stem cells by multiplexing ALDH1, CD44, and cytokeratin identifies breast cancer patients with poor prognosis.
      • Tanei T.
      • Morimoto K.
      • Shimazu K.
      • Kim S.J.
      • Tanji Y.
      • Taguchi T.
      • Tamaki Y.
      • Noguchi S.
      Association of breast cancer stem cells identified by aldehyde dehydrogenase 1 expression with resistance to sequential Paclitaxel and epirubicin-based chemotherapy for breast cancers.
      Furthermore, different isoforms of ALDH might be important in stem cell biology.
      • Marcato P.
      • Dean C.A.
      • Pan D.
      • Araslanova R.
      • Gillis M.
      • Joshi M.
      • Helyer L.
      • Pan L.
      • Leidal A.
      • Gujar S.
      • Giacomantonio C.A.
      • Lee P.W.
      Aldehyde dehydrogenase activity of breast cancer stem cells is primarily due to isoform ALDH1A3 and its expression is predictive of metastasis.
      Typically, ALDH1 is assessed with a flow cytometry-based system.
      • Alison M.R.
      • Guppy N.J.
      • Lim S.M.
      • Nicholson L.J.
      Finding cancer stem cells: are aldehyde dehydrogenases fit for purpose?.
      Immunohistochemistry is another popular method for in situ detection at the protein level. IHC in general is prone to certain limitations related to suboptimal standardization and validation assays, as well as subjectivity in the interpretation of the results.
      • Anagnostou V.K.
      • Welsh A.W.
      • Giltnane J.M.
      • Siddiqui S.
      • Liceaga C.
      • Gustavson M.
      • Syrigos K.N.
      • Reiter J.L.
      • Rimm D.L.
      Analytic variability in immunohistochemistry biomarker studies.
      We assessed the expression of ALDH1 in two large cohorts of patients with NSCLC, using an immunofluorescence-based, objective, and quantitative approach.

      Materials and Methods

      Patient Cohorts

      The first cohort of NSCLC cases (n = 134) was accrued by serial collection of formalin-fixed, paraffin-embedded tissue obtained from the Department of Pathology at Yale University (New Haven, CT). The second cohort (n = 296) was obtained from the pathology departments of Sotiria General Hospital (Athens, Greece) and Patras University Hospital (Rion, Greece) in a similar manner. In the Yale cohort, patients were diagnosed during the period 1993 to 2003, with all but three patients diagnosed after 1995. The median age was 66 years (range, 42 to 86 years), and median follow-up time was 27.1 months (range, 0.23 to 133 months). In the Sotiria/Patras cohort, patients were diagnosed during the period 1990 to 2008, with all but one patient diagnosed after 1999. The median age was 65 years (range, 34 to 84 years), and median follow-up time was 20 months (range, 0.1 to 223). Histological diagnosis was based on the World Health Organization classification for lung tumors,
      • Brambilla E.
      • Travis W.D.
      • Colby T.V.
      • Corrin B.
      • Shimosato Y.
      The new World Health Organization classification of lung tumours.
      and stage was determined using the American Joint Committee for Cancer staging system.
      • Edge S.B.
      • Compton C.C.
      The American Joint Committee on Cancer: the 7th edition of the AJCC cancer staging manual and the future of TNM.
      Patient demographics for the two cohorts are given in Table 1. The study was approved by the institutional review boards of all centers. Written informed consent was obtained for each case before inclusion in the study.
      Table 1Clinicodemographic Data for Two Cohorts of NSCLC Patients, with AQUA Score for ALDH1 Expression
      VariableYale cohortSotiria/Patras cohort
      No. (%)AQUA scoreNo. (%)AQUA score
      All patients134 (100)7039 (619–24,090)296 (100)5429 (606–23,424)
      Age at diagnosis (years)
       ≤6563 (47)6385 (787–23,738)136 (45)5429 (670–23,424)
       >6571 (53)7434 (619–24,090)138 (46)4948 (606–22,662)
       Missing data022 (9)
      Sex
       Male70 (52)8102 (619–24,090)242 (82)5660 (670–23,424)
       Female64 (48)6448 (787–21,989)35 (12)12,853 (606–22,662)
       Missing data019 (6)
      Histotype
       AC83 (61)5077 (619–21,989)111 (37.5)2703 (670–21,133)
       LCC7 (5)7696 (978–24,090)2 (0.6)899–1358
       SCC26 (20)13,232 (1071–23,738)146 (49.4)9139 (606–23,424)
       Other/mixed18 (13)8035 (832–21,936)17 (5.7)3922 (935–20,502)
       Missing data0 (0)20 (6.8)
      Stage
       IA47 (35)9977 (619 (24,090)23 (8)5202 (938–21,360)
       IB21 (15)3745 (846–19,278)66 (22)5971 (606–22,226)
       II18 (13)5940 (656–21,989)79 (26)7190 (674–23,424)
       III33 (24)6316 (787–21,936)78 (27)4006 (674–22,662)
       IV12 (9)3076 (809–17,791)29 (27)2783 (670–21,634)
       Missing data3 (2)21 (7)
      AQUA scores were calculated as the ratio of the sum of the target pixels in the tumor mask divided by the area of the tumor mask and are expressed as median (range).
      AC, adenocarcinoma; CI, confidence interval; HR, hazards ratio; LCC, large cell carcinoma; NSCLC, non-small cell lung cancer; SCC, squamous cell carcinoma.

      Tissue Microarray Construction

      Formalin-fixed, paraffin-embedded tissue blocks were scored twice in representative tumor areas using 0.6-mm cores and were arrayed into a recipient block at the Yale Pathology Tissue Services facility. Formalin-fixed, paraffin-embedded pellets were prepared using standard cell block methods from the cell lines MCF7, H1299, H1355, H1666, HCC193, HCC2279, HT29, H2126, A549, SW480, HCC15, H1819, A431, and H1650 were purchased from the American Type Culture Collection (ATCC, Manassas, VA) or were donated by other laboratories (HCC193, HCC2279, HCC15) and were used as positive and negative controls. Culture conditions were as described previously.
      • McCabe A.
      • Dolled-Filhart M.
      • Camp R.L.
      • Rimm D.L.
      Automated quantitative analysis (AQUA) of in situ protein expression, antibody concentration, and prognosis.
      An index array containing both the cell lines and tissue from 30 patients with a range of ALDH1 expression in twofold redundancy was assayed with each cohort array.

      Antibodies and Quantitative Immunofluorescence

      The BD Transduction Laboratories clone 44 mouse monoclonal antibody to ALDH1 was used (BD Biosciences, San Jose, CA). This antibody has been extensively validated in previous work by our research group.
      • Neumeister V.
      • Agarwal S.
      • Bordeaux J.
      • Camp R.L.
      • Rimm D.L.
      In situ identification of putative cancer stem cells by multiplexing ALDH1, CD44, and cytokeratin identifies breast cancer patients with poor prognosis.
      Arrays were deparaffinized in xylene (soaking twice for 20 minutes) and rehydrated with ethanol (twice in 100% ethanol 100% for 1 minute and then in 95%, 85%, and 70% ethanol for 1 minute each). Antigen retrieval was performed in a PT module (LabVision, Fremont, CA) with citrate buffer (pH 6) at 97°C for 20 minutes. Endogenous peroxidase activity was blocked with 30-minute incubation in 2.5% hydrogen peroxide in methanol at room temperature. Nonspecific antigens were blocked with incubation in 0.3% bovine serum albumin in Tris-buffered saline/Tween for 30 minutes at room temperature. Slides were then incubated overnight with a cocktail of the ALDH1 mouse monoclonal antibody (dilution 1:1000) and a rabbit monoclonal cytokeratin antibody (dilution 1:100; Dako, Carpinteria, CA). Ideal titers were determined as an optimal combination of image appearance and a quantitative ratio of signal to background for each of the primary antibodies, after a range of titers had been tried out in a series of test arrays. Next, a cocktail of Molecular Probes Alexa Fluor 546-conjugated goat anti-rabbit secondary antibody (Life Technologies-Invitrogen, Carlsbad, CA) diluted 1:100 in mouse EnVision reagent (Dako) was applied to the slides for 1 hour at room temperature. Cyanine 5 (Cy5)-tyramide (PerkinElmer, Boston, MA) was used at dilution 1:50 at room temperature for 10 minutes for signal amplification. Finally, Molecular Probes Prolong Gold (Life Technologies-Invitrogen) containing DAPI was used to detect nuclei. An index array was stained alongside each cohort array to allow the standardization of the assay, along with negative (no primary antibody) and positive controls.
      The AQUA technology is a method of calculating protein concentration in subcellular compartments and has been described in detail elsewhere.
      • Camp R.L.
      • Chung G.G.
      • Rimm D.L.
      Automated subcellular localization and quantification of protein expression in tissue microarrays.
      • Dolled-Filhart M.
      • Gustavson M.
      • Camp R.L.
      • Rimm D.L.
      • Tonkinson J.L.
      • Christiansen J.
      Automated analysis of tissue microarrays.
      Briefly, monochromatic images of DAPI and of the complexes target-Cy5 and cytokeratin-Alexa Fluor 546 were captured under a microscopy-based multiplex imaging device and microarray reader (PM-2000; HistoRx, New Haven, CT). A tumor mask was created to define the tumor area after binarization of the cytokeratin signal such that every pixel is either ‘on' or ‘off' on the basis of a clustering algorithm. AQUA scores in the tumor mask were calculated as the ratio of the sum of the target pixels in the tumor mask divided by the area of the tumor mask. AQUA scores were normalized for the exposure time, bit depth, and lamp hours to account for diminishing intensity over time for optimal standardization and reproducibility.

      Statistical Analysis

      Tumor heterogeneity of ALDH1 expression and assay reproducibility were assessed with Pearson's correlation coefficient (R) between the AQUA scores from redundant cores and serial cuts of the arrays. R2 > 0.4 was considered acceptable tumor heterogeneity, and R2 > 0.9 was considered to be acceptable assay reproducibility. Log-rank test was used to assess statistical significance in Kaplan-Meier survival curves. Kruskal-Wallis test and Mann-Whitney U-test were used to compare continuous ALDH1 AQUA scores between patients with different demographics. All statistical analyses were performed using JMP software version 9 (SAS Institute, Cary, NC). The level of statistical significance was set at 5%.

      Results

      Threshold for ALDH1 Detection

      In NSCLC, we identified four patterns of ALDH1 expression. In one group, tumors do not express the protein in either the epithelial component or the stroma. In a second group, there is only modest stromal expression. In a third group, expression in the epithelial component is variable and ranges from limited focal expression to expression in the majority of the tumor cells. In the fourth group, ALDH1 is strongly expressed throughout the tumor area. For the present study, we focused only on ALDH1 expression in the epithelial component of the tumors. We therefore consider the first and second groups as being negative for ALDH1 and the third and fourth groups as positive. Three cases representative of the range are shown in Figure 1. Below the detection threshold, ALDH1 expression is in the stromal component only (Figure 1, A and B). Near the detection threshold, ALDH1 is expressed weakly and focally in the epithelial component (Figure 1, C and D). Well above the detection threshold, ALDH1 is uniformly expressed throughout the epithelial compartment (Figure 1, E and F). This last case, a high expresser, yielded an AQUA score of 15,324. The first two cases, with an AQUA score of 1171 and 1272, respectively, indicated an AQUA score of 1200 as the threshold of ALDH1 detection in our assay, and examination of many other cases near the threshold (data not shown) confirmed this cutpoint as the limit of detection for our system. Furthermore, we tested the expression of ALDH1 in a panel of cell lines and found that a threshold AQUA score of 1200 was consistent with the levels measured in cell lines. However, the broader difference between nonexpressing and expressing cell lines in our tests suggested that a better threshold could be selected using tissue samples from patient tumor cases (see Supplemental Figure S1 at http://ajp.amjpathol.org). Validation of ALDH1 patterns of expression in cell lines has been published previously.
      • Neumeister V.
      • Agarwal S.
      • Bordeaux J.
      • Camp R.L.
      • Rimm D.L.
      In situ identification of putative cancer stem cells by multiplexing ALDH1, CD44, and cytokeratin identifies breast cancer patients with poor prognosis.
      Figure thumbnail gr1
      Figure 1Three cases illustrate the range of ALDH1 expression in NSCLC. For each case, the entire spot is shown on the left; the boxed region corresponds to the higher magnification image on the right. A and B: ALDH1 (red) is expressed in the stromal component only, not in the epithelial component (green, defined by cytokeratin localization), and is therefore below the detection threshold. C and D: Some weak and focal expression of ALDH1 is evident in the epithelial compartment, as revealed by colocalization of cytokeratin with ALDH1. E and F: Strong and uniform expression of ALDH1 is evident in the epithelial compartment. Original magnification, ×200.

      Range of Expression and Tumor Heterogeneity

      ALDH1 had a broad dynamic range of expression in both cohorts (Figure 2A). In the Yale cohort, AQUA scores ranged from 619 to 24,090 (Table 1). Based on the AQUA score threshold, 18 cases (13.4%) were classified as nonexpressers and 116 cases (86.6%) as expressers. In the Sotiria/Patras cohort, AQUA scores ranged from 606 to 23,424; 46 cases (15.5%) were classified as nonexpressers and 250 cases (84.5%) as expressers. Approximately half of the expressers exhibited variable expression and the other half exhibited strong expression throughout the tumor area.
      Figure thumbnail gr2
      Figure 2ALDH1 has a broad dynamic range of expression in both the Yale cohort and the Sotiria/Patras cohort. A: The dynamic range of AQUA scores for ALDH1 expression in the two cohorts. The red horizontal line indicates the signal-to-noise threshold. B: Tumor heterogeneity in the Sotiria/Patras cohort is illustrated by the correlation between AQUA scores for tissue microarray (TMA) cores that represent separate tumor areas.
      The correlation of AQUA scores between serial cuts of the index array run in independent experiments showed that the assay is highly reproducible (R2 = 0.98) (data not shown). Heterogeneity of NSCLC in ALDH1 expression assessed in the Sotiria/Patras cohort showed quite homogeneous and consistent ALDH1 expression across redundant tissue cores taken from different areas of the tumor (R2 = 0.86) (Figure 2B).

      Differential Expression of ALDH1 across Various Subgroups of Patients

      In both cohorts, ALDH1 was more abundant in squamous cell carcinomas than in adenocarcinomas (Figure 3). In the Yale cohort, AQUA scores ranged from 1071 to 23,738 (median, 13,232) in the squamous cell carcinoma group and from 619 to 21,989 (median, 5077) in the adenocarcinoma group (P = 0.0059 between the two groups) (Figure 3A). In the Sotiria/Patras cohort, scores ranged from 606 to 23,424 (median, 9139) in the squamous cell carcinoma group and from 670 to 21,133 (median, 2703) in the adenocarcinoma group (P < 0.0001 between the two groups) (Figure 3B). Similar analysis did not reveal any differences in ALDH1 expression between patients differing in sex, stage, or age (data not shown).
      Figure thumbnail gr3
      Figure 3Differential expression of ALDH1 in patients with different histotypes. Patients with squamous cell carcinoma (SCC) are higher expressers of ALDH1 than patients with adenocarcinoma (AC) in both the Yale cohort (A) and the Sotiria/Patras cohort (B). The white horizontal lines in the boxplots represent the medians of each distribution. Comparisons were performed with the Mann-Whitney U-test.

      Prognostic Potential of ALDH1 in NSCLC

      We then tested the effect of ALDH1 expression on patient prognosis, based on the AQUA score-defined threshold of detection. Surprisingly, and contrary to cancer stem cell theories, we found that absence of ALDH1 expression identified a group of patients with worse prognosis, compared with patients who exhibited at least some minimal expression. Both cohorts showed this result when all of the patients with NSCLC were included in the analysis (Figure 4, A and B). In the Yale cohort, the group of patients with no ALDH1 expression had a median survival of 24.5 months; whereas the group with at least some ALDH1 expression had a median survival of 56.8 months (P = 0.0035) (Figure 4A). In the Sotiria/Patras cohort, the median survival was 23 months for the nonexpressers and 36 months for expressers (P = 0.0238) (Figure 4B). When the population was divided into nonexpressers (ALDH1 negative), ALDH1 low expressers, and ALDH1 high expressers using the threshold of detection and the median score of the ALDH1-positive group as cutpoints, survival was progressively better with increasing level of expression (P = 0.0074 in the Yale cohort; P = 0.0019 in the Sotiria/Patras cohort) (see Supplemental Figure S2, A and B, at http://ajp.amjpathol.org).
      Figure thumbnail gr4
      Figure 4Absence of detectable ALDH1 defines a subgroup of patients with worse prognosis in both the Yale cohort (A) and the Sotiria/Patras cohort (B). Similar results are seen in the adenocarcinoma subset from the Yale cohort (C) and the Sotiria/Patras cohort (D). Expressers are defined by AQUA score above the signal-to-noise threshold as defined in . Insets in A and B are frequency distributions of the ALDH1 AQUA scores. The x axis is the AQUA score (divided by 1000) and the y axis is the number of cases.
      ALDH1 expression was present in all histology subtypes. When outcome was examined within histological classes, we found that among patients with adenocarcinoma in the Yale cohort the absence of ALDH1 expression was associated with a median survival of 23 months, compared with 58.9 months for adenocarcinoma patients positive for ALDH1 (P = 0.0001) (Figure 4C). Among patients with adenocarcinoma in the Sotiria/Patras cohort, groups with negative and positive ALDH1 status had median survival times of 23 and 40 months, respectively; this difference was not significant (P = 0.45) (Figure 4D). When analysis was restricted to patients with squamous cell carcinoma, we found a trend for worse survival at the absence of ALDH1 expression in the Sotiria/Patras cohort (data not shown). Analysis was not feasible for patients with squamous cell carcinoma in the Yale cohort, because of the low number of ALDH1-negative patients in this subgroup.
      Cox univariate and multivariate analyses were performed to quantify the effects of different clinicopathologic factors on survival. Age at diagnosis, sex, histotype, stage, and ALDH1 expression (after binarization into expresser and nonexpresser groups) were included in the univariate and multivariate models. In the univariate model, only stage and ALDH1 expression had a significant effect in survival (Table 2). The hazard ratio for negative status of ALDH1 in the Yale cohort was 2.24 (P = 0.0087); in the Sotiria/Patras cohort, it was 1.62 (P = 0.036) (Table 2). In the multivariate model, nonexpression of ALDH1 affected survival negatively with a hazard ratio of 3.2 in the Yale cohort (P = 0.0008) (Table 3) and 1.51 in the Sotiria/Patras cohort (P = 0.08) (Table 3). ALDH1 expression significantly and negatively affects survival as a continuous variable in the Cox model in both cohorts (P = 0.041 for Yale cohort and P = 0.003 for the Sotiria/Patras cohort).
      Table 2Univariate Analysis
      VariableYale cohortSotiria/Patras cohort
      HR (95% CI)P valueHR (95% CI)P value
      Age at diagnosis (years)
       ≤650.82 (0.56–1.2)0.320.87 (0.64–1.2)0.4
       >6511
      Sex
       Male1.18 (0.8–1.73)0.390.97 (0.62–1.6)0.87
       Female11
      Histotype
       AC1.06 (0.65–1.78)0.81.15 (0.82–1.6)0.39
       LCC0.7 (0.26–1.63)0.432.38 (0.13–10.87)0.44
       SCC11
       Other/mixed1.51 (0.84–2.7)0.151.21 (0.69–2.01)0.49
      Stage
       IA0.15 (0.08–0.31)<0.00010.19 (0.07–0.42)<0.0001
       IB0.28 (0.1–0.59)<0.0010.29 (0.17–0.5)<0.0001
       II0.27 (0.13–0.58)0.0010.45 (0.28–0.75)0.0024
       III0.84 (0.46–1.5)0.580.7 (0.45–1.13)0.14
       IV11
      ALDH1 expression
       No2.24 (1.24–3.82)0.00871.62 (1.03–2.45)0.036
       Yes11
      AC, adenocarcinoma; CI, confidence interval; HR, hazards ratio; LCC, large cell carcinoma; SCC, squamous cell carcinoma.
      Table 3Multivariate Analysis
      VariableYale cohort (n = 131)Sotiria/Patras cohort (n = 267)
      HR (95% CI)P valueHR (95% CI)P value
      Age at diagnosis (years)
       ≤650.75 (0.46–1.22)0.240.91 (0.64–1.31)0.64
       >6511
      Sex
       Male0.37 (0.59–1.58)0.90.90 (0.55–1.58)0.72
       Female11
      Histotype
       AC0.8 (0.43–1.55)0.50.93 (0.63–1.35)0.71
       LCC0.98 (0.29–2.76)0.980.0003 (0–21.65)0.66
       SCC11
       Other/mixed1.28 (0.56–2.84)0.541.21 (0.56–2.35)0.59
      Stage
       IA0.25 (0.1–0.65)0.00550.21 (0.08–0.51)0.0003
       IB0.3 (0.11–0.84)0.00230.3 (0.16–0.56)0.0002
       II0.19 (0.06–0.58)0.0040.46 (0.26–0.83)0.01
       III1.69 (0.77–4.05)0.170.82 (0.49–1.42)0.47
       IV11
      ALDH1 expression
       No3.2 (1.67–6.05)0.00081.51 (0.94–2.34)0.08
       Yes11
      AC, adenocarcinoma; CI, confidence interval; HR, hazards ratio; LCC, large cell carcinoma; SCC, squamous cell carcinoma.

      Discussion

      Expression of ALDH1 has been associated with the cancer stem cell phenotype. Ginestier et al
      • Ginestier C.
      • Hur M.H.
      • Charafe-Jauffret E.
      • Monville F.
      • Dutcher J.
      • Brown M.
      • Jacquemier J.
      • Viens P.
      • Kleer C.G.
      • Liu S.
      • Schott A.
      • Hayes D.
      • Birnbaum D.
      • Wicha M.S.
      • Dontu G.
      ALDH1 is a marker of normal and malignant human mammary stem cells and a predictor of poor clinical outcome.
      found that as few as 20 cells that are ALDH1 positive and also have the CD44+/CD24/lin phenotype are able to form tumors when implanted in the fat pad of nude mice; in contrast, when cells are not selected for this particular phenotype, as many as 500 ALDH1-positive cells are needed. They also showed that the presence of these putative cancer stem cells in breast cancer tissue, identified using ALDH1, was associated with worse outcome. Tanei et al
      • Tanei T.
      • Morimoto K.
      • Shimazu K.
      • Kim S.J.
      • Tanji Y.
      • Taguchi T.
      • Tamaki Y.
      • Noguchi S.
      Association of breast cancer stem cells identified by aldehyde dehydrogenase 1 expression with resistance to sequential Paclitaxel and epirubicin-based chemotherapy for breast cancers.
      found that ALDH1-expressing breast cancers were shown to be more likely negative for ER and PR expression, but positive for HER2 and Ki-67, correlating with more aggressive breast cancer subtypes. Using IHC to look for cells positive for both ALDH1 and CD44 in 108 breast cancer patients treated with neoadjuvant chemotherapy, they found that residual tumors showed an increase in epithelial ALDH1 expression. They suggested that the putative cancer stem cells are capable of escaping chemotherapy and potentially driving tumor progression.
      • Tanei T.
      • Morimoto K.
      • Shimazu K.
      • Kim S.J.
      • Tanji Y.
      • Taguchi T.
      • Tamaki Y.
      • Noguchi S.
      Association of breast cancer stem cells identified by aldehyde dehydrogenase 1 expression with resistance to sequential Paclitaxel and epirubicin-based chemotherapy for breast cancers.
      In previous work from our research group, cells expressing both ALDH1 and CD44 were a marker for poor outcome in breast cancer.
      • Neumeister V.
      • Agarwal S.
      • Bordeaux J.
      • Camp R.L.
      • Rimm D.L.
      In situ identification of putative cancer stem cells by multiplexing ALDH1, CD44, and cytokeratin identifies breast cancer patients with poor prognosis.
      In other organ systems, the ALDH1 marker may not have the same implications. It has been reported that ALDH1 is a marker of better differentiation in liver cancer cells in vitro.
      • Chen X.
      • Lingala S.
      • Khoobyari S.
      • Nolta J.
      • Zern M.A.
      • Wu J.
      Epithelial mesenchymal transition and hedgehog signaling activation are associated with chemoresistance and invasion of hepatoma subpopulations.
      Distinctive patterns in ALDH1 expression in normal tissues and correlations with their corresponding tumors have been reported,
      • Deng S.
      • Yang X.
      • Lassus H.
      • Liang S.
      • Kaur S.
      • Ye Q.
      • Li C.
      • Wang L.P.
      • Roby K.F.
      • Orsulic S.
      • Connolly D.C.
      • Zhang Y.
      • Montone K.
      • Bützow R.
      • Coukos G.
      • Zhang L.
      Distinct expression levels and patterns of stem cell marker, aldehyde dehydrogenase isoform 1 (ALDH1), in human epithelial cancers.
      as well as loss of ALDH1 in ovarian cancer compared with benign ovarian tumors and normal ovaries.
      • Penumatsa K.
      • Edassery S.L.
      • Barua A.
      • Bradaric M.J.
      • Luborsky J.L.
      Differential expression of aldehyde dehydrogenase 1a1 (ALDH1) in normal ovary and serous ovarian tumors.
      Taken together, these studies imply that ALDH1 is more likely to be present in a cancer if it is present in the corresponding normal tissue and that ALDH1 loss may be an additional step of carcinogenesis. Furthermore, in a study using the same antibody as in the present study, ALDH1 expression was shown to predict favorable prognosis in ovarian cancer.
      • Chang B.
      • Liu G.
      • Xue F.
      • Rosen D.G.
      • Xiao L.
      • Wang X.
      • Liu J.
      ALDH1 expression correlates with favorable prognosis in ovarian cancers.
      Because a number of different antibodies have been used for the detection of ALDH1 with IHC in human cancers and in normal tissues,
      • Deng S.
      • Yang X.
      • Lassus H.
      • Liang S.
      • Kaur S.
      • Ye Q.
      • Li C.
      • Wang L.P.
      • Roby K.F.
      • Orsulic S.
      • Connolly D.C.
      • Zhang Y.
      • Montone K.
      • Bützow R.
      • Coukos G.
      • Zhang L.
      Distinct expression levels and patterns of stem cell marker, aldehyde dehydrogenase isoform 1 (ALDH1), in human epithelial cancers.
      • Jiang F.
      • Qiu Q.
      • Khanna A.
      • Todd N.W.
      • Deepak J.
      • Xing L.
      • Wang H.
      • Liu Z.
      • Su Y.
      • Stass S.A.
      • Katz R.L.
      Aldehyde dehydrogenase 1 is a tumor stem cell-associated marker in lung cancer.
      • Sullivan J.P.
      • Spinola M.
      • Dodge M.
      • Raso M.G.
      • Behrens C.
      • Gao B.
      • Schuster K.
      • Shao C.
      • Larsen J.E.
      • Sullivan L.A.
      • Honorio S.
      • Xie Y.
      • Scaglioni P.P.
      • DiMaio J.M.
      • Gazdar A.F.
      • Shay J.W.
      • Wistuba I.I.
      • Minna J.D.
      Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling.
      • Patel M.
      • Lu L.
      • Zander D.S.
      • Sreerama L.
      • Coco D.
      • Moreb J.S.
      ALDH1A1 and ALDH3A1 expression in lung cancers: correlation with histologic type and potential precursors.
      the choice of antibody could potentially explain discrepant findings in prognostic studies. In the present study, we used clone 44 for ALDH1 detection; this antibody has been validated with Western blot for its specificity.
      • Neumeister V.
      • Agarwal S.
      • Bordeaux J.
      • Camp R.L.
      • Rimm D.L.
      In situ identification of putative cancer stem cells by multiplexing ALDH1, CD44, and cytokeratin identifies breast cancer patients with poor prognosis.
      In addition, we observed that the signal for ALDH1 is specific and cytoplasmic, as expected, but that it varies within a broad dynamic range. Also, in lung cancer, in contrast to breast cancer, the expression pattern is homogeneous in different areas taken from the same tumor, further validating the efficiency of our assay to adequately detect ALDH1. Deng et al
      • Deng S.
      • Yang X.
      • Lassus H.
      • Liang S.
      • Kaur S.
      • Ye Q.
      • Li C.
      • Wang L.P.
      • Roby K.F.
      • Orsulic S.
      • Connolly D.C.
      • Zhang Y.
      • Montone K.
      • Bützow R.
      • Coukos G.
      • Zhang L.
      Distinct expression levels and patterns of stem cell marker, aldehyde dehydrogenase isoform 1 (ALDH1), in human epithelial cancers.
      used the same clone to detect ALDH1 and found similar patterns of ALDH1 expression in NSCLC. Although neither their study nor ours comprehensively addressed the issue of tumor heterogeneity, future work could begin to address this issue by quantitatively comparing expression across tissue sections.
      The literature includes discrepant findings with respect to the prognostic value of ALDH1 in lung cancer. Jiang et al
      • Jiang F.
      • Qiu Q.
      • Khanna A.
      • Todd N.W.
      • Deepak J.
      • Xing L.
      • Wang H.
      • Liu Z.
      • Su Y.
      • Stass S.A.
      • Katz R.L.
      Aldehyde dehydrogenase 1 is a tumor stem cell-associated marker in lung cancer.
      showed that higher ALDH1 expression is associated with worse prognosis in patients with early-stage NSCLC. Similarly, Sullivan et al
      • Sullivan J.P.
      • Spinola M.
      • Dodge M.
      • Raso M.G.
      • Behrens C.
      • Gao B.
      • Schuster K.
      • Shao C.
      • Larsen J.E.
      • Sullivan L.A.
      • Honorio S.
      • Xie Y.
      • Scaglioni P.P.
      • DiMaio J.M.
      • Gazdar A.F.
      • Shay J.W.
      • Wistuba I.I.
      • Minna J.D.
      Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling.
      showed that ALDH1 expression had a negative effect on survival in their cohort, although it was not independent in the proportional hazards model. In both studies, the antibodies used to detect ALDH1 differed from that in the present study, and both studies used subjective determinations of expression. In both studies, cases were classified as positive or negative on the basis of a semiquantitative rule that uses the product of the percentage of cells positive and the intensity of staining, after pathology review. In the study by Jiang et al,
      • Jiang F.
      • Qiu Q.
      • Khanna A.
      • Todd N.W.
      • Deepak J.
      • Xing L.
      • Wang H.
      • Liu Z.
      • Su Y.
      • Stass S.A.
      • Katz R.L.
      Aldehyde dehydrogenase 1 is a tumor stem cell-associated marker in lung cancer.
      an arbitrary cutpoint was chosen, and approximately a third of the cases were considered to be positive, even though a number of cases with focal or weak expression were included in the positive group. (In the present study, the majority of the cases were considered to be positive on the basis of a reproducible cutpoint that represents the threshold of detection in our assay.) On the other hand, Sullivan et al
      • Sullivan J.P.
      • Spinola M.
      • Dodge M.
      • Raso M.G.
      • Behrens C.
      • Gao B.
      • Schuster K.
      • Shao C.
      • Larsen J.E.
      • Sullivan L.A.
      • Honorio S.
      • Xie Y.
      • Scaglioni P.P.
      • DiMaio J.M.
      • Gazdar A.F.
      • Shay J.W.
      • Wistuba I.I.
      • Minna J.D.
      Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling.
      used a statistical cutpoint (median) to divide their population into ALDH1 high and low expressers. Although both Jiang et al
      • Jiang F.
      • Qiu Q.
      • Khanna A.
      • Todd N.W.
      • Deepak J.
      • Xing L.
      • Wang H.
      • Liu Z.
      • Su Y.
      • Stass S.A.
      • Katz R.L.
      Aldehyde dehydrogenase 1 is a tumor stem cell-associated marker in lung cancer.
      and Sullivan et al
      • Sullivan J.P.
      • Spinola M.
      • Dodge M.
      • Raso M.G.
      • Behrens C.
      • Gao B.
      • Schuster K.
      • Shao C.
      • Larsen J.E.
      • Sullivan L.A.
      • Honorio S.
      • Xie Y.
      • Scaglioni P.P.
      • DiMaio J.M.
      • Gazdar A.F.
      • Shay J.W.
      • Wistuba I.I.
      • Minna J.D.
      Aldehyde dehydrogenase activity selects for lung adenocarcinoma stem cells dependent on notch signaling.
      concluded that higher ALDH1 expression predicts worse prognosis in NSCLC, a universal cutpoint was not determined, because the two studies were not equivalent in their methods for selection of cutpoint and neither study assessed reproducibility.
      The present study has a number of limitations. First, because the group of ALDH1-negative patients comprised only 15% of the total population, the low total number of patients when grouped by histotype was insufficient for definitive analysis. Second, treatment data were not available in detail on either cohort, and therefore could not be included in the proportional hazards Cox model. The absence of enforced uniform treatment, as would be present in a clinical trial, weakens prognostic conclusions. Nonetheless, the fact that we see stage-specific prognostic value increases the strength of the conclusion, because treatments are more uniform within defined stages. Finally, it is difficult to explain the ALDH1 prognostic effect seen in the present study and to link it with the cancer stem cell theory.
      Both Ginestier et al
      • Ginestier C.
      • Hur M.H.
      • Charafe-Jauffret E.
      • Monville F.
      • Dutcher J.
      • Brown M.
      • Jacquemier J.
      • Viens P.
      • Kleer C.G.
      • Liu S.
      • Schott A.
      • Hayes D.
      • Birnbaum D.
      • Wicha M.S.
      • Dontu G.
      ALDH1 is a marker of normal and malignant human mammary stem cells and a predictor of poor clinical outcome.
      and Liang and Shi
      • Liang D.
      • Shi Y.
      Aldehyde dehydrogenase-1 is a specific marker for stem cells in human lung adenocarcinoma.
      used expression of ALDH1 as a surrogate for identification of cancer stem cells. Although we have not performed any experiments in lung cancer cell cultures or animal models to explore cancer stem cells properties, it is possible that ALDH1 is not sufficient as a single marker to indicate cancer stem cells in all organ systems. Our finding that ALDH1 expression predicts favorable prognosis in patients with NSCLC may be a function of better differentiation in these tumors. Further studies are needed to unravel the function of ALDH1 in NSCLC and to evaluate its potential value as a prognostic marker in the routine clinical setting.

      Supplementary data

      • Supplemental Figure S1

        A: AQUA scores of the different cell lines used for assay standardization. The red line (dot-and-dash) indicates the threshold of detection. B: ALDH1 expression for three of the cell lines (indicated by arrows in A): H2126, below the detection threshold; H1355, borderline positive; and A431, strong positive. ck, cytokeratin. Scale bar = 100 µm.

      • Supplemental Figure S2

        Division of the ALDH1 expressers into two groups, low expressers and high expressers, shows that higher levels are associated with better prognosis in both the Yale cohort (A) and the Sotiria/Patras cohort (B). Low and high expressers are defined on the basis of the median AQUA score among expressers.

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